A Simple Perl CGI
HOME

Repeats regions & their secondary structure in the PDBID : 1y1v_A

>1y1v_A mol:protein length:1733 DNA-directed RNA polymerase II largest subuni
1537-1554
VSSPGFSPTSPTYSPTSP
1558-1575
PTSPSYSPTSPSYSPTSP
1579-1596
PTSPSYSPTSPSYSPTSP
1600-1617
PTSPSYSPTSPSYSPTSP
1621-1638
PTSPSYSPTSPSYSPTSP
1642-1659
PTSPSYSPTSPSYSPTSP
1663-1680
PTSPSYSPTSPSYSPTSP
1684-1701
PTSPSYSPTSPNYSPTSP
1705-1719
PTSPGYSPGSPAYSP...
xxx
1463-1494
EDGQDGGVTPYSN.ESGLVNADLDVKDELMFSP
1501-1533
NDAMAGGFTAYGGaDYGEATSPFGAYGEAPTSP
x
x
995-1039
ENLLVLRGKNeIIQNAQRDAVTLFCCllrSRLATRR.VLQEYRL..TK
1062-1102
EMVGVLAAQS.IGEPATQMTLNTFHF...AGVASKK.VTSGVPR..LK
1103-1144
EILNV..AKN.MKTPSLTVYLEPGHA...ADQEQAKlIRSAIEHttLK
TT S SSxHHHHHHHHHHHHHHHxxxHHHHHHSx HHHHHHxxTS
HHHHHHHHxHHHHHHH S S xxx SSTTS x SHHHxxHH
HHHHTxx SSx S EEEB SS SxxxS TTHHHxHHHHHHBxx
308-333
IAGQPQ.ALQKSGRPvKSIRARLKGKE
353-378
ISGDPNlELDQVGVP.KSIAKTLTYPE
SS x BTTTB x HHHHHSSS
EEE TTxS TTEEEExEHHHHTT EEE
1241-1277
RVVRPK......SLDAETEAEEDHMLKKIENTMLENITLRGVE
1281-1323
RVVMMKydrkvpSPTGEYVKEPEWVLETDGVNLSEVMTVPGID
E xxxxxx STTHHHHHHHTTTTS B SSBS
EEEExxxxxxE EEE TTSSEEE EEEEE SS HHHHT
153-199
PSEDDPTQLVSR..GGCGNTQPTIRKDGLKLVGSWKKDRATGDADePEL
396-443
PNEHPGAKYVIRdsGDRIDLRYSKRAGDIQLQYGWKVERHIMDND.PVL
E SS TTSEEE xxS B EEEEETTEEEEE x
TTSSS BS EEExxTTTEEE TTS TTSS TT EEEEE TxT E
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 1y1v_B

>1y1v_B mol:protein length:1224 DNA-directed RNA polymerase II 140 kDa polype
628-716
TDAGRVY...RPLFIVEDDESLGHKELKVrkGHIAKLMATEYqdieGGF..EDVEEYTWSSlLNEGLVE......YIDAEEEESILIAMQPEdlEPAEAN
791-881
TMANILYypqKPLGTTRAMEYLKFRELPA..GQNAIVAIACY....SGYnqEDSMIMNQSS.IDRGLFRslffrsYMDQEKKYGMSITETFE..KPQRTN
S EExxx EEE TTSS S xx HHHHHHHHHHxxxxHH xx x HHHHxxxxxxHHTTSEE BSHHHHT xx EESSS
S EEESxxxS B SEE GGGGGT TTxxS EEEEEEEExxxxEE xxSS STTTEEExE HHHHHxxxxxxTTTT EEEE EEEE xxB TTS
141-169
DVPGRELkYELIAEESED.....DSESGKVFIGR
304-336
DVNDWQM.LEMLKPCVEDgfviqDRETALDFIGR
x xxxxx EEE
SS HHHxHHHHHHHHHHxxxxxHTT SHHHHH
98-119
TKPMVNesdGVTHALYPQEARL
578-596
TRVFVN...GVWHGVHRNPARL
xxx TTS HHH
EEETxxxTEE B S HHHH
474-539
SSRAG.VSQVLNRYTYSS.TLSHLRRTNTPIGRDG.KLAKpRQLHNTHWGLVCPAETPEGQACGLVKNL
943-1010
STENGiVDQVLVTTNQDGlKFVKVRVRTTKIPQIGdKFAS.RHGQKGTIGITYRREDMPFTAEGIVPDL
S TTx SEE SSSHHxHHHHHTEEE SS xSSS xTTS STTTTTB SS TTSTTTSEE
TT xEEEE EEEETTxTEEEEEEEEEEEE xTT ExEB SSS EEEEE TTTS B TTS
283-298
VIIFRALGIIPDGEIL
910-925
VIIGKTTPISPDEEEL
HHHHHHTT STTTTH
B B EE
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 1y1v_C

>1y1v_C mol:protein length:318 DNA-directed RNA polymerase II 45 kDa polypep
165-191
KEHAK.WGPAAAIEFEyDPWNKLKHTDY
195-221
QDSAKeWPQSKNCEYE.DPPNEGDPFDY
GG TTxS S S EE x SS S S
S HHHxHS GGGGGxS TTS
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 1y1v_D

>1y1v_D mol:protein length:221 DNA-directed RNA polymerase II 32 kDa polypep
20-31
EEENAATLQLGQ
43-54
EEEELIALNLSE
SSSS G
EE EE TTH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 1y1v_E

>1y1v_E mol:protein length:215 DNA-directed RNA polymerases I, II, and III 2
31-60
TQEEV.ELP.LEDFKAKYCDSMGRPQRKMMSF
65-96
TEESIsKFPdMGSLWVEFCDEPSVGVKTMKTF
HHHHxS xHHHHHHHHB SSS B GGGT E
SHHHxHH xTT EEEEE S TB TTHHH
126-169
SIPPaTIETFNEAALVVNITHHELVpKHIRLSSDEKRelLKRYR
173-212
SQLP.RIQRADPVALYLGLKRGEVV.KIIRKSETSGR..YASYR
GS SxSEEEEEEHHHHTS GGGSSSx B TTHxxHHHHH
GGS xEE TT HHHHHTT TT Bx EE SSSSExxE B
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 1y1v_F

>1y1v_F mol:protein length:155 DNA-directed RNA polymerases I, II, and III 2
10-23
DGneNFEDFDVEHF
140-151
DG..SFEDWSVEEL
xx
TSxx EEEEETTTS
63-75
QIRRKTLKEKAIP
119-131
RIAMKELAEKKIP
HHHHHHHHTT
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 1y1v_H

>1y1v_H mol:protein length:146 DNA-directed RNA polymerases I, II, and III 1
33-51
QDQcklTLDINVELFPVAA
52-70
QDSltvTIASSLNLEDTPA
TTxxx EEEEEEETTTS
S ExxxEEEE S
PDB View PDBsum View Pfam View