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Repeats regions & their secondary structure in the PDBID : 2ja8_A

>2ja8_A mol:protein length:1733 DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI
1537-1554
VSSPGFSPTSPTYSPTSP
1558-1575
PTSPSYSPTSPSYSPTSP
1579-1596
PTSPSYSPTSPSYSPTSP
1600-1617
PTSPSYSPTSPSYSPTSP
1621-1638
PTSPSYSPTSPSYSPTSP
1642-1659
PTSPSYSPTSPSYSPTSP
1663-1680
PTSPSYSPTSPSYSPTSP
1684-1701
PTSPSYSPTSPNYSPTSP
1705-1719
PTSPGYSPGSPAYSP...
xxx
1463-1494
EDGQDGGVTPYSN.ESGLVNADLDVKDELMFSP
1501-1533
NDAMAGGFTAYGGaDYGEATSPFGAYGEAPTSP
x
x
995-1039
ENLLVLRGKNeIIQNAQRDAVTLFCCllrSRLATRR.VLQEYRL..TK
1062-1102
EMVGVLAAQS.IGEPATQMTLNTFHF...AGVASKK.VTSGVPR..LK
1103-1144
EILNV..AKN.MKTPSLTVYLEPGHA...ADQEQAKlIRSAIEHttLK
TT S SSxHHHHHHHHHTTHHHHxxxHHHHHHSx HHHHHHxxTS
HHHHHHHHxHHHHHHS xxx xS SHHHxxHH
HHHHTxx SSx S EEEB SS xxxS HHHHHxHHHHHHSxx E
308-333
IAGQPQ.ALQKSGRPvKSIRARLKGKE
353-378
ISGDPNlELDQVGVP.KSIAKTLTYPE
SS x BTTTB x HHHHHSSS
EEE TTxS TTEEEExEHHHHTTSEE
1241-1277
RVVRPK......SLDAETEAEEDHMLKKIENTMLENITLRGVE
1281-1323
RVVMMKydrkvpSPTGEYVKEPEWVLETDGVNLSEVMTVPGID
EEB xxxxxx HHHHTTHHHHHHHHS EEES T
EEEExxxxxxE EEE TTS EEE EEEEE SS HHHHT
153-199
PSEDDPTQLVSR..GGCGNTQPTIRKDGLKLVGSWKKDRATGDADePEL
396-443
PNEHPGAKYVIRdsGDRIDLRYSKRAGDIQLQYGWKVERHIMDND.PVL
SS SSS EE xxS EEEEETTEEEEE x
SSSSS BS EEExxTTTEEE TTT TTTT TT B EE TxT
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Repeats regions & their secondary structure in the PDBID : 2ja8_B

>2ja8_B mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPE
628-716
TDAGRVY...RPLFIVEDDESLGHKELKVrkGHIAKLMATEYqdieGGF..EDVEEYTWSSlLNEGLVE......YIDAEEEESILIAMQPEdlEPAEAN
791-881
TMANILYypqKPLGTTRAMEYLKFRELPA..GQNAIVAIACY....SGYnqEDSMIMNQSS.IDRGLFRslffrsYMDQEKKYGMSITETFE..KPQRTN
SS EExxxEEEEE SSSS SSxx HHHHHTTHHHxxxxHH xx x HHHHxxxxxxHHTTSEEEEEHHHHTT xx EESST
S EEEESxxxS B SSB TTGGGTT TTxxS EE EEExxxxB xxSS STTTEEExEEHHHHHxxxxxxTTTT EEEEEEEEE xx TTS
141-169
DVPGRELkYELIAEESED.....DSESGKVFIGR
304-336
DVNDWQM.LEMLKPCVEDgfviqDRETALDFIGR
x xxxxx EEE
TT HHHxHHHHHHHHHHxxxxxHTT SHHHHH
98-119
TKPMVNesdGVTHALYPQEARL
578-596
TRVFVN...GVWHGVHRNPARL
EE xxx TTS EE HHH
EEETxxxTEE EES HHH
474-539
SSRAG.VSQVLNRYTYSS.TLSHLRRTNTPIGRDG.KLAKpRQLHNTHWGLVCPAETPEGQACGLVKNL
943-1010
STENGiVDQVLVTTNQDGlKFVKVRVRTTKIPQIGdKFAS.RHGQKGTIGITYRREDMPFTAEGIVPDL
S TTxSSEE SSHHHxHHHHHTB x x SS GGGTTTB SS SSSSBTTB B
TT xEEEEEEEEEETTxTEEEEEEEEEEEE xSS ExEE SSS EEEEEEEE TTTS B TTS
283-298
VIIFRALGIIPDGEIL
910-925
VIIGKTTPISPDEEEL
HHHHHHTT STTHHH
EEE EE
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Repeats regions & their secondary structure in the PDBID : 2ja8_C

>2ja8_C mol:protein length:318 DNA-DIRECTED RNA POLYMERASE II 45KDA POLYPEPT
165-191
KEHAK.WGPAAAIEFEyDPWNKLKHTDY
195-221
QDSAKeWPQSKNCEYE.DPPNEGDPFDY
TT GGxG EE x SS SS
S HHHxHS GGGTTxS TTS
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Repeats regions & their secondary structure in the PDBID : 2ja8_D

>2ja8_D mol:protein length:221 DNA-DIRECTED RNA POLYMERASE II 32KDA POLYPEPT
20-31
EEENAATLQLGQ
43-54
EEEELIALNLSE
BTTTB G
EEE EE TTH
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Repeats regions & their secondary structure in the PDBID : 2ja8_F

>2ja8_F mol:protein length:155 DNA-DIRECTED RNA POLYMERASES I, II, AND III 2
10-23
DGneNFEDFDVEHF
140-151
DG..SFEDWSVEEL
xx
TSxx EEEEETTTS
63-75
QIRRKTLKEKAIP
119-131
RIAMKELAEKKIP
TTB
HHHHHHTTTT
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Repeats regions & their secondary structure in the PDBID : 2ja8_H

>2ja8_H mol:protein length:146 DNA-DIRECTED RNA POLYMERASES I, II, AND III 1
33-51
QDQcklTLDINVELFPVAA
52-70
QDSltvTIASSLNLEDTPA
SSxxx EEEEEE TTTS
S ExxxEEEE S S
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Repeats regions & their secondary structure in the PDBID : 2ja8_K

>2ja8_K mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYP
50-91
WDKNFTENDLLVR.IGK........HSRTRYE.R.NiEKISMLEkiyihPRYN
92-135
WRENLDRDIALMK.LKKPVAFsdyiHPVCLPD.R.E.TAASLLQ.....AGYK
141-182
W.GNLKGQPSVLQvVNLPIVE....RPVCKDStRiR.ITDNMFC.....AGYK
GGT TTEEEEEEEx S xxxxxxxxTTS EEExExExEEE TTSxxxxx HHH
HHHHHHHHHHHHHxHHHHHS xxxx x x xxxxxx
xxxxxxxxxxxxxx
192-219
CEGDSGGPFVMKSPFNNRWYQMGIVSWG
222-249
CDRDGKYGFYTHVFRLKKWIQKVIDQFG
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Repeats regions & their secondary structure in the PDBID : 2ja8_L

>2ja8_L mol:protein length:70 DNA-DIRECTED RNA POLYMERASES I, II, AND III 7
293-318
AVSLFGRDCSIqrRHQKIVEEAPA.TI
322-346
AIFEFMEQCAI..RLAKTVGYVSAgTV
xxx
xxx
86-100
ANAEYIKMADHYVPV
110-124
ANVELIVDIAKRIPV
148-184
GVAFLG..PPSEAMWALGDKIASTVVAQTLQVPTLPWSG
409-447
GVTPISfeTPSNPPLARGHVIAARITSENPDEGFKPSSG
xx
xx
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