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Repeats regions & their secondary structure in the PDBID : 2nvx_A

>2nvx_A mol:protein length:1733 DNA-directed RNA polymerase II largest subuni
1537-1554
VSSPGFSPTSPTYSPTSP
1558-1575
PTSPSYSPTSPSYSPTSP
1579-1596
PTSPSYSPTSPSYSPTSP
1600-1617
PTSPSYSPTSPSYSPTSP
1621-1638
PTSPSYSPTSPSYSPTSP
1642-1659
PTSPSYSPTSPSYSPTSP
1663-1680
PTSPSYSPTSPSYSPTSP
1684-1701
PTSPSYSPTSPNYSPTSP
1705-1719
PTSPGYSPGSPAYSP...
xxx
1463-1494
EDGQDGGVTPYSN.ESGLVNADLDVKDELMFSP
1501-1533
NDAMAGGFTAYGGaDYGEATSPFGAYGEAPTSP
x
x
995-1039
ENLLVLRGKNeIIQNAQRDAVTLFCCllrSRLATRR.VLQEYRL..TK
1062-1102
EMVGVLAAQS.IGEPATQMTLNTFHF...AGVASKK.VTSGVPR..LK
1103-1144
EILNV..AKN.MKTPSLTVYLEPGHA...ADQEQAKlIRSAIEHttLK
GG S SxHHHHHHHHHHHTTTTxxxSSSSSS x HHHHHHxxTS
BHHHHHHHHxHHHHHHS xxx xS SHHHxxHH
HHTTTxx SSx S EEEEB SS xxxS HHHHHxHHHHHHSxx E
308-333
IAGQPQ.ALQKSGRPvKSIRARLKGKE
353-378
ISGDPNlELDQVGVP.KSIAKTLTYPE
SSS x SSS SSx TTHHHHSSS
EEE TTxS TTEEE xBHHHHHH EE
1241-1277
RVVRPK......SLDAETEAEEDHMLKKIENTMLENITLRGVE
1281-1323
RVVMMKydrkvpSPTGEYVKEPEWVLETDGVNLSEVMTVPGID
EE xxxxxx TTHHHHGGGTSSSS EEES T
EEEE xxxxxx EEEEE TTSSEEEEE EEEESS HHHHT
153-199
PSEDDPTQLVSR..GGCGNTQPTIRKDGLKLVGSWKKDRATGDADePEL
396-443
PNEHPGAKYVIRdsGDRIDLRYSKRAGDIQLQYGWKVERHIMDND.PVL
SSSSSS xx EEETTEEE x
TTSSS EEEEE xxTTS EE TTS SSTT TT EEEE TxT E
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Repeats regions & their secondary structure in the PDBID : 2nvx_B

>2nvx_B mol:protein length:1224 DNA-directed RNA polymerase II 140 kDa polype
628-716
TDAGRVY...RPLFIVEDDESLGHKELKVrkGHIAKLMATEYqdieGGF..EDVEEYTWSSlLNEGLVE......YIDAEEEESILIAMQPEdlEPAEAN
791-881
TMANILYypqKPLGTTRAMEYLKFRELPA..GQNAIVAIACY....SGYnqEDSMIMNQSS.IDRGLFRslffrsYMDQEKKYGMSITETFE..KPQRTN
S EExxxE EE TTSSS SSxx HHHHHHHTHHxxxxHHTxx x SHHHxxxxxxHTTTSB EETTGGGG xx EES S
S EEEESxxxS B SEE GGGTTTTTTTxxS SEEEEEEExxxxB xxSSTTTTTEEExEEHHHHHxxxxxxHTTT EEEEEEEEE xx
141-169
DVPGRELkYELIAEESED.....DSESGKVFIGR
304-336
DVNDWQM.LEMLKPCVEDgfviqDRETALDFIGR
x xxxxx EEE
SS HHHxHHHHHHHHTTxxxxxTTT SHHHHH
98-119
TKPMVNesdGVTHALYPQEARL
578-596
TRVFVN...GVWHGVHRNPARL
SS EExxx SSS EE HHH
EEEEESxxxS EEEEEE HHH
474-539
SSRAG.VSQVLNRYTYSS.TLSHLRRTNTPIGRDG.KLAKpRQLHNTHWGLVCPAETPEGQACGLVKNL
943-1010
STENGiVDQVLVTTNQDGlKFVKVRVRTTKIPQIGdKFAS.RHGQKGTIGITYRREDMPFTAEGIVPDL
GGGTTxSSB SSHHHxHHHHHTEEE x xTTS GGGTTTB SS STTTTTSEE
TT EExEEEEEEEEEETTxTEEEEEEEEEEEE xTT xEE SSS B EEEEEE TTTS EETT
283-298
VIIFRALGIIPDGEIL
910-925
VIIGKTTPISPDEEEL
HHHHHHHT STTTHH
EEE EEE
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Repeats regions & their secondary structure in the PDBID : 2nvx_C

>2nvx_C mol:protein length:318 DNA-directed RNA polymerase II 45 kDa polypep
57-83
IRKAGDGSARAIVLTGQGTAFCAGADL
99-125
LHKAMDASPMPVVGAINGPAIGAGLQL
SS HHHHHHHHHTS B TTGGGS T
EEEEE SS EEEEGGGEEE S
154-172
WS..IRRLSSL.VGHgrARAML
201-220
WAaeIARLAPLaIQH..AKRVL
EExxEEEEEEEx TTxxT GGG
S xx GGGSSxS xx TTS
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Repeats regions & their secondary structure in the PDBID : 2nvx_E

>2nvx_E mol:protein length:215 DNA-directed RNA polymerases I, II, and III 2
57-83
IRKAGDGSARAIVLTGQGTAFCAGADL
99-125
LHKAMDASPMPVVGAINGPAIGAGLQL
TT EE B HHHHTT TT EEEEE
HHHHHT SEEEEEESSEE TTTGGGST
154-172
WS..IRRLSSL.VGHgrARAML
201-220
WAaeIARLAPLaIQH..AKRVL
EExx HHHHHxHHHxxHHTT
E xxSSSSEEExEEExxEE
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Repeats regions & their secondary structure in the PDBID : 2nvx_F

>2nvx_F mol:protein length:155 DNA-directed RNA polymerases I, II, and III 2
10-23
DGneNFEDFDVEHF
140-151
DG..SFEDWSVEEL
xx
TSxx EEEEETTTS
63-75
QIRRKTLKEKAIP
119-131
RIAMKELAEKKIP
HHHHHHHHTT
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Repeats regions & their secondary structure in the PDBID : 2nvx_H

>2nvx_H mol:protein length:146 DNA-directed RNA polymerases I, II, and III 1
157-181
RTSEDvvvSKVGRDLYNKF.FRGYTR
202-224
RTNRD...NRYFADTYQAMpLHGYTR
xxxx
xxxx
95-145
FEYLSRFTEWRPYQHRVLASVDGQLLPipinLDTVNrlYGLNLTSFQVEEF
265-309
FDFCYGKLPYRSLEFRHETHDTEQLLP....TGTVN..YPNDYAYTRVSEF
EEEE EEEEEE STT EEEEEEETTExxxxEEEEExxESTTTTTS SSS
xxxxxx
52-70
GqrVLIVDRRPHI.GGNAYD
76-93
G..VLIHPYGPHIfHTNSKD
Txx EEEEE S x
xx GGGxS S
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Repeats regions & their secondary structure in the PDBID : 2nvx_I

>2nvx_I mol:protein length:122 DNA-directed RNA polymerase II subunit 9
157-181
RTSEDvvvSKVGRDLYNKF.FRGYTR
202-224
RTNRD...NRYFADTYQAMpLHGYTR
xxxx
xxxx
95-145
FEYLSRFTEWRPYQHRVLASVDGQLLPipinLDTVNrlYGLNLTSFQVEEF
265-309
FDFCYGKLPYRSLEFRHETHDTEQLLP....TGTVN..YPNDYAYTRVSEF
EEEEESSS EEE SS xxxx xx
xxxxxx
52-70
GqrVLIVDRRPHI.GGNAYD
76-93
G..VLIHPYGPHIfHTNSKD
TxxTSS S GGGxGT SSS
TxxTT S EEEExE SS
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