A Simple Perl CGI

Repeats regions & their secondary structure in the PDBID : 2nvz_A

>2nvz_A mol:protein length:1733 DNA-directed RNA polymerase II largest subuni

MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR

1537-1554	VSSPGFSPTSPTYSPTSP
1558-1575	PTSPSYSPTSPSYSPTSP
1579-1596	PTSPSYSPTSPSYSPTSP
1600-1617	PTSPSYSPTSPSYSPTSP
1621-1638	PTSPSYSPTSPSYSPTSP
1642-1659	PTSPSYSPTSPSYSPTSP
1663-1680	PTSPSYSPTSPSYSPTSP
1684-1701	PTSPSYSPTSPNYSPTSP
1705-1719	PTSPGYSPGSPAYSP...








	xxx
1463-1494	EDGQDGGVTPYSN.ESGLVNADLDVKDELMFSP
1501-1533	NDAMAGGFTAYGGaDYGEATSPFGAYGEAPTSP
	x
	x
995-1039	ENLLVLRGKNeIIQNAQRDAVTLFCCllrSRLATRR.VLQEYRL..TK
1062-1102	EMVGVLAAQS.IGEPATQMTLNTFHF...AGVASKK.VTSGVPR..LK
1103-1144	EILNV..AKN.MKTPSLTVYLEPGHA...ADQEQAKlIRSAIEHttLK
	TS SS SSxHHHHHHHHHHHHHHHxxxHHHHHHSx HHHHBTxxTS
	BHHHHHSSTxTHHHHHHHSSS SxxxSS SSxSSSSHHHxxHH
	HHHHTxx SSx SS EEEEEB TTSSxxxSTTSTHHxHHHTTTSxx
308-333	IAGQPQ.ALQKSGRPvKSIRARLKGKE
353-378	ISGDPNlELDQVGVP.KSIAKTLTYPE
	SSS x x TTHHHHSSS
	EEE TTxS TTEEB xBHHHHTT B
1241-1277	RVVRPK......SLDAETEAEEDHMLKKIENTMLENITLRGVE
1281-1323	RVVMMKydrkvpSPTGEYVKEPEWVLETDGVNLSEVMTVPGID
	xxxxxx HHHHHHHHHHHHTT BSSS T
	EEEEExxxxxxEEEEEE TTSSEEEEEEEEEEEE HHHHT
153-199	PSEDDPTQLVSR..GGCGNTQPTIRKDGLKLVGSWKKDRATGDADePEL
396-443	PNEHPGAKYVIRdsGDRIDLRYSKRAGDIQLQYGWKVERHIMDND.PVL
	xx SS EEEE SSSEEEE x
	TTSSS B EE xxSS EE SSSSSSTT SS B B SxS E

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Repeats regions & their secondary structure in the PDBID : 2nvz_B

>2nvz_B mol:protein length:1224 DNA-directed RNA polymerase II 140 kDa polype

MSDLANSEKYYDEDPYGFEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF

628-716	TDAGRVY...RPLFIVEDDESLGHKELKVrkGHIAKLMATEYqdieGGF..EDVEEYTWSSlLNEGLVE......YIDAEEEESILIAMQPEdlEPAEAN
791-881	TMANILYypqKPLGTTRAMEYLKFRELPA..GQNAIVAIACY....SGYnqEDSMIMNQSS.IDRGLFRslffrsYMDQEKKYGMSITETFE..KPQRTN
	TT EExxx B EES TT SSEES xx HHHHHHHHHHxxxxHH xx x HHHHxxxxxxHHTTSB BHHHHTT xx EESST
	S EEESxxxS B SEE GGGGTTT SSxxS EE EEEExxxx SxxSSSSTTTEEExE HHHHHxxxxxxHTTT EEEEEEEEE xx SSSS
141-169	DVPGRELkYELIAEESED.....DSESGKVFIGR
304-336	DVNDWQM.LEMLKPCVEDgfviqDRETALDFIGR
	x xxxxx EEEE
	SS HHHxHHHTHHHHHHxxxxxHTTS SSTTTS
98-119	TKPMVNesdGVTHALYPQEARL
578-596	TRVFVN...GVWHGVHRNPARL
	S Bxxx TTS B HHH
	EEEEESxxxS EEEEES HHH
474-539	SSRAG.VSQVLNRYTYSS.TLSHLRRTNTPIGRDG.KLAKpRQLHNTHWGLVCPAETPEGQACGLVKNL
943-1010	STENGiVDQVLVTTNQDGlKFVKVRVRTTKIPQIGdKFAS.RHGQKGTIGITYRREDMPFTAEGIVPDL
	S xSEE S HHHxHHHHHTEEE x x SS GGGTTTB SS SSSTTTSEE
	TT EExEEEEEEEEE SSxS EEEEEEEEEEE xTT xEEETTS B EEEEE TTTS EESS
283-298	VIIFRALGIIPDGEIL
910-925	VIIGKTTPISPDEEEL
	HHHHHTTT SSTTT
	SB EE

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Repeats regions & their secondary structure in the PDBID : 2nvz_C

>2nvz_C mol:protein length:318 DNA-directed RNA polymerase II 45 kDa polypep

165-191	KEHAK.WGPAAAIEFEyDPWNKLKHTDY
195-221	QDSAKeWPQSKNCEYE.DPPNEGDPFDY
	TS GGxG EE xB SS SS S
	S STTxTS STTTTxS TT

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Repeats regions & their secondary structure in the PDBID : 2nvz_F

>2nvz_F mol:protein length:155 DNA-directed RNA polymerases I, II, and III 2

124-147	QLRDSKS..SDKsvCLF....TDFDSQTNV
149-176	QSKDSDVyiTDK..CVLdmrsMDFKSNSAV
	HHHTT xx ExxEEExxxxEETTEEEE
	TTSB xxxxxxxx

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