A Simple Perl CGI

Repeats regions & their secondary structure in the PDBID : 2o8b_A

>2o8b_A mol:protein length:934 DNA mismatch repair protein Msh2

241-299	..............................LNRlLKGKKG..EQM.NSAV.LPEMENQVAVSSLSAVIKFLEllsdDSNFGQF..ELTTFDFSQY
301-387	KLDIAAVR.ALNLfQGSVEDTTGSQSLAALLNK.CKTPQG..QRLVNQWIKQPLMDKNRIEERLNLVEAFVE....DAELRQTlqEDLLRRFPDL
389-442	RLAKKFQRqAANL.QDCYRLYQGINQLPNVIQA.LEKHEGkhQKLLLAVFVTPLTD.......................................
	xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxT x xxS TxTTTTxS GGGG HHHHHHHHHHHHHSxxxx TTSSTTxxS S
	EE HHHHHxHTT xS HHHHH x SSHHxxHHHHHHHHHHS B HHHHHHHHHHHHHHHxxxxHHSHHHHxxHHHTTTGGG
	HHHHHHHTxT xHHHHHHHHHHHHTSHHHHHxHHTTSSxxSSTT SSTTSSHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
136-179	FGNndMSASIGVVGVKMSAVDGQRQVG.VGYVDSIQRKLGL.......CEFP
184-233	FSN..LEALLIQIGPKECVLPGGETAGdMGKLRQIIQRGGIliterkkADFS
	TT xx EEEEE SSSSS ExEEEEEEETTTTEExxxxxxxEEEE
	HHxxHHHHHHHH SEEEE SSSxHHHHHHHHHHTTTxxxxxxx EEE

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Repeats regions & their secondary structure in the PDBID : 2o8b_B

>2o8b_B mol:protein length:1022 DNA mismatch repair protein MSH6

MGSAPQNSESQAHVSGGGDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLASERSTVDAEAVHKLLTLIKEL

779-844	CEEEEQENGKAYCVLVTG..PNMGGKSTlMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLG.ASDR
937-1004	CEDPSQETITFLYKFIKGacPKSYGFNA.ARLANLPEEVIQKGHRKAREFEKMNQSLRLFREVClASER
	S EEEEE xx TTSSHHHxHHHHHHHHHHHHTTT EESSEEEE SBEEEE x
	EEEEEESSxx HHHxHHHHHTT HHHHHHHHHHHHHTTSSTTSTTTS x
46-92	RRPDHPDFDA....STLYVPE...DFLnSCTPGMRkwwqiksqnfdlVICYKVG
495-535	KSQNHPDSRAimyeETTYSKKkiiDFL.SALEGFK............VMCKIIG
	TTSTT TxxxxT HxxxHHHxTTS HHHxxxxxxxxxxxxHHHHHHH
	HHHH GGGG xxxx S HHHxxxHHHxHHHHHHHxxxxxxxxxxxxHHHHHHH
337-418	EKSELAlSALGGCVFYLKKcLIDQELLSMANFEEYIPLD.SDTVstTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEG
654-732	EEYELK.STKKGCKRYWTK.TIEKKLANLINAEERRDVSlKDCM..RRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGG
	GGGHHHxHHHHHHHHHHHHxHHT HHHHHTT EEE xGGGGxxT B B HHHHHHTT SS SSS
	EEExEETTEEEE TTxTHHHHHHHHHHHHHHHHHHxHHHHxxHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTT
282-314	GLI.PGSQF.WDASKTLRTLLEEEY....FREKLSDGIG
587-625	GLItPKAGFdSDYDQALADIRENEQslleYLEKQRNRIG
	EE xBTTTBx HHHHHHHHHHTTTxxxxTSSSS
	x TT x HHHHHHHHHHHHxxxxHHHHHHHHTS

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