A Simple Perl CGI

Repeats regions & their secondary structure in the PDBID : 2o8f_A

>2o8f_A mol:protein length:934 DNA mismatch repair protein Msh2

241-299	..............................LNRlLKGKKG..EQM.NSAV.LPEMENQVAVSSLSAVIKFLEllsdDSNFGQF..ELTTFDFSQY
301-387	KLDIAAVR.ALNLfQGSVEDTTGSQSLAALLNK.CKTPQG..QRLVNQWIKQPLMDKNRIEERLNLVEAFVE....DAELRQTlqEDLLRRFPDL
389-442	RLAKKFQRqAANL.QDCYRLYQGINQLPNVIQA.LEKHEGkhQKLLLAVFVTPLTD.......................................
	xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxT x S xx TxTTTTxSSTTT HHHHHHHHHHHHHTxxxxTGGGSTTxxS B
	EE HHHHHxHHTSxS HHHHH x SSHHxxHHHHHHHHHHS B HHHHHHHHHHHHHHHxxxxTT HHHHxxHHTTTTGGG
	HHHHHHHTxS xSHHHHHHHHHHHTHHHHHHxHTTTSSxxS SS TT TTTHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
136-179	FGNndMSASIGVVGVKMSAVDGQRQVG.VGYVDSIQRKLGL.......CEFP
184-233	FSN..LEALLIQIGPKECVLPGGETAGdMGKLRQIIQRGGIliterkkADFS
	S xx EEEEE ExEEEEEEETTTTEExxxxxxxEEEE
	HHxxHHHHHHHH SEEEE SS xTHHHHHHHHHTTTxxxxxxx EEE

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Repeats regions & their secondary structure in the PDBID : 2o8f_B

>2o8f_B mol:protein length:1022 DNA mismatch repair protein MSH6

MGSAPQNSESQAHVSGGGDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREVCLASERSTVDAEAVHKLLTLIKEL

779-844	CEEEEQENGKAYCVLVTG..PNMGGKSTlMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLG.ASDR
937-1004	CEDPSQETITFLYKFIKGacPKSYGFNA.ARLANLPEEVIQKGHRKAREFEKMNQSLRLFREVClASER
	SSS EEEEE xx SSS SHHxHHHHHHHHHHHHTTT BSSSEEEE SBEEEE x
	EEEEEEESxx S TTHxHHHTTTT HHHHHHHHHHHHHTTTTGGGGGTS x
46-92	RRPDHPDFDA....STLYVPE...DFLnSCTPGMRkwwqiksqnfdlVICYKVG
495-535	KSQNHPDSRAimyeETTYSKKkiiDFL.SALEGFK............VMCKIIG
	TTSTT TxxxxT HxxxHHHxTSS HHHxxxxxxxxxxxxHHHHHHH
	TSSS GGGS xxxx TTHHHxxxHHHxHHHHHHHxxxxxxxxxxxxHHHHHHH
337-418	EKSELAlSALGGCVFYLKKcLIDQELLSMANFEEYIPLD.SDTVstTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEG
654-732	EEYELK.STKKGCKRYWTK.TIEKKLANLINAEERRDVSlKDCM..RRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGG
	TTTHHHxHHHHHHHHHHHHxHTT HHHHGGG EE xTTGGxxG B B HHHHHHTT SSB SSS
	xEETTEEEE TTxTHHHHHHHHHHHHHHHHHHxHHHHxxHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
282-314	GLI.PGSQF.WDASKTLRTLLEEEY....FREKLSDGIG
587-625	GLItPKAGFdSDYDQALADIRENEQslleYLEKQRNRIG
	EE xBTTTBx HHHHHHHHHHTTTxxxxTTTTS
	x SS x HHHHHHHHHHHHxxxxHHHHHHHHHH

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