A Simple Perl CGI

Repeats regions & their secondary structure in the PDBID : 2ppb_K

>2ppb_K mol:protein length:315 DNA-directed RNA polymerase alpha chain

87-99	VRFLNPSLQTVTL
120-132	VEIMNPDLHIATL
	EEE STT SEEEE
	EEES S EEEEB

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Repeats regions & their secondary structure in the PDBID : 2ppb_C

>2ppb_C mol:protein length:1119 DNA-directed RNA polymerase beta chain

MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR

761-884	FKGESEPTPEERLLRSI...FGEKardvkdtslrvpPGEG.GIVVRTVR.LRRGDPGVELKPGvrevvRVYVAQKRKLQVGDKLANRHGNKG.......VVAKIL......PVEDMPHLPDGTPVDVIL.NPLGVPSRMNlGQ
906-1030	FDGAKEPEIKELLAQAFevyFGKR............KGEGfGVDKREVEvLRRAEKLGLVTPG.....KTPEEQLKELFLQGKVVLYDGRTGepiegpiVVGQMFimklyhMVEDKMHARSTGPYSLITqQPLGGKAQFG.GQ
	ESSSSS HHHHHHHHHxxxHHS xxxxxxxxxxxx ExEE B xSS EEEEEEEExxxxx SS SS TTEEEEEEEEEEEExxxxxxxEE TTxxxxxx EEE SSS EEEEEEEE xTTTS B SSSx B
	TTS HHHHHHHHHHHHxxxHHHHxxxxxxxxxxxxHHHHxHTT HxHHHHHHHHHHTTTxxxxxSS TTS HHHHHHHHHHTTEE Bxxxxxxx SSS xxxxxxB SS EEEEEEEEEEB x TTTS EEESxS
630-641	RSNQGTALDQRP
648-659	RVRKGDLLADGP
	E TTSBEE EE
	B TT EEEE T
304-348	....................................................LPTLRYLFALTAGVP........GHEVDDI..DHLGNRRIRTV..GELMTDQFRVGL
349-451	ARLARGVRermlmgsedsltpaklvnsrpleaaireffsrsqlsqfkdetnpLSSLRHKRRISALGPggltreraGFDVRDVhrTHYG..RICPVetPE....GANIGL
453-482	TSLAAYAR......................................................................VDEL..GFIRTPYRRVV..GGVVTDE.....
	xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHS SxxxxxxxxS TxxTSTTTEEEE HxxHHHHHHHHHHHH
	HHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHS SS THHHxxxxxxxxH SHHHxxHHHHxxHHHHHxxT xxxxSSEEE
	EEBBSS ExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxE SSxxS EEB EEEEExxTTEEEEExxxxx
170-246	PWIDLEVEPNGVVSMKVNKRKFplVLLLRVLGYDQETLARELGAYgELVQGLMDESVFAMR..PEEALIRLFTLLRPGD
678-753	PFDGYNFEDAIVISEELLKRDF..YTSIHIERYEIEARDTKLGPE.RITRDIPHLSEAALRdlDEEGVVRIGAEVKPGD
	EEEEEETTTEEEE SSSS Bxx HHHHHHHHT HHHHHHHHSxSS STHHHHSS HHHxxHT HHHHHHHHHHHSS
	SSTTSSSEEEEETHHHHTTSxxSEEEEEEEEEEEEE TT xB S TTS STTTSxxS SSSB TT B T
5-16	RFGR.IREVIPLP
154-166	RPGRyIASIIPLP
	x S
	SS x EEEE S
484-528	VYMTATEED..RYTIAQANTPLEGNriaaervVARRKGEPVIVSPEE
578-617	VVMTGLEERvvRDSLAALYAEEDGE.......VAKVDGNRIVVRYED
	B TTHHHxxHS EE TTS BSSSxxxxxxxBB SSEEEESSSSE
	SEE S HHHxxHHHHTT SEE SSSxxxxxxxEEEEEE SSBEEEEE
63-75	GLVLDFLEYRLGE
259-271	GLIADPRRYDLGE
	EEEEE B
	TTSSSS S TTT

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Repeats regions & their secondary structure in the PDBID : 2ppb_M

>2ppb_M mol:protein length:1119 DNA-directed RNA polymerase beta chain

7-34	SPAILSVSPGERVS.FSCRASQS.IGTDiH
43-70	SPRLLIKYASESISgIPSRFSGSgSGTD..
74-93	..SINSVESEDIAN.YYCQQSN.......R
	S TTHxHHHHHHHHxHSGGxG
	THHHHHHHS SEEEx SSS ExEEEExx
	xx SS HHHHHHxTT EExxxxxxxE

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Repeats regions & their secondary structure in the PDBID : 2ppb_D

>2ppb_D mol:protein length:1524 DNA-directed RNA polymerase beta' chain

MKKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEAKERPAARRGVKREQPGKQA

31-68	AATV...LLVIVLLAGSYLAVLAE.RGAPGAQLITYPRALWW
73-114	ATTVgygDLYPVTLWGRCVAVVVMvAGITSFGLVTAALATWF
	B TxxxTSSSB SSSTT TTTS x SSSS SSSSS SSTT
	SSSxxx SSSHHHHH BEEExEEEEEEE HHHHSSSS

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Repeats regions & their secondary structure in the PDBID : 2ppb_N

>2ppb_N mol:protein length:1524 DNA-directed RNA polymerase beta' chain

2-194	..........................KK.E..VRKVRIAL.ASPEKIRSWSYGEV..EKPETINY.RTlkpERDGLF................D..ErifgPIKDYECACGkYKRQRFEGKVCERcGVEVTKS.....IVRRYRMGHIELATPAAHIW...FVK.DV..PS..KIGTLLDLSATEL..EQVLYFS......KYI.VLDPKGAILngvpVEKRQLLTDEEYrelrygKQETYPLPPGVD.ALVKDGEEVVKGQELA.PG
195-424	VVSRLDGVAL.YRFPRRV...RVEYVKK.E..RAGLRLPL.AAWVEKEAYKPGEILAELPEPYLF.RA...EEEGVVELKELEEGAFLVLRRED..E....PVATYFLPVG.MTPLVVHGEIVEK.GQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTE..PKDYRVQPHMNVVVPEG..ARVEAGD......KIVAAIDPEEEVI....AEAEGVVHLHEPasilvvKARVYPFEDDVE...VSTGDRVAPGDVLA.DG
427-595	VKSDVYG.........RV...EVDLVRNvV..RVVESYDI.DARMGAEAIQ..QLLKELDLEAL.......EKELLEEMKHPSRARRAKARKRL..E.....VVRAFLDSG.NRP...........................................EWMILEAVPvlPPDLR..PMVQV...DG..GRFATSDlndlyrRLINRNNRLKKLL......AQGA.....P..eiiiRNEKRMLQEAVD.ALLDNGR...RGAPVTnPG
603-794	LTDILSG.KQ.GRFRQNLlgkRVDYSGR.SviVVGPQLKL......HQCGLPKRMALELFKPFLLkKM...EEKGIA..PNVKAARRMLERQRDikD....EVWDAL.......EEVIHGKVVL.....LNRAPTLHRL..GIQAFQ.PVLVEGQSIQLHPLVCEAF..NADFD.GDQMAVHVPLSsfAQAEARI......QMLSA....HNLL....SPASG.........................ePLAKPSRDIILGLYYI.TQ
795-882	VRKEKKGAGLeFATPEEA...LAAHERG.E..VA.LNAPIkVAGRETSVGRLKYVFAN.PDEALL..A...VAHGIVDLQDVVTVRYMGKRLET..S....PGRILF.................................................................................................................................................................
	xxxxxxxxxxxxxxxxxxxxxxxxxx x xx EEEEE x HHHHHHHBSS xx S B TxTSxxxSSB SSxxxxxxxxxxxxxxxxSxxTxxxxT TTTS SSxSS SSSSS SSTxTTT TxxxxxTS SSTHHHHH BEEEExxxEEExEExxE xxHHHHSSSS HHHHxxHTTS TTxxxxxxHHHxHHHHHS ExxxxEE S S SSSxxxxxxS SS EE HHHxHHHHHTSS EEEE TxT
	SS EEEExEE xxx x xx x x xxx xx xxxx x x xx xx xxxxxx xxxx xxxxxx EEEEESEEEEExxx SS BSS TT EE xTT
	EE SS ExxxxxxxxxEExxxEEETTTTxExxEEEES x EEETHHHHxxHHHHHT HHHxxxxxxxHHHHHHHHHHSS HHHHHHHHHHxxHxxxxxHHHHHHHHHx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGGGEEEEExxEE TxxTTS ExxxEExx STT EExxxxxxE THHHHHHHHHHxxxxxxHHHHxxxxxHxxxxxxHHHHHH HHHxHHHHHHHxxxHHHHHHxHH
	HHHHHSSxTTxSHHHHHHxxxHT SSxExxEEEEEEE xxxxxxTT TTEEB BHHHHHHHTxHHxxxHHHHHHxxHTTTT SSHHHHHHHxxHxxxxHSGGG xxxxxxx HHHHHHHHHxxxxxHTTT EEEExx SS SxGGGEEEEEE BSSS EEExx SGGGxTTTT SSS ExxEEEE xxxxxxSHHHHxxxxHHHHxxxxHTSBGxxxxxxxxxxxxxxxxxxxxxxxxxxGG B SSSSSBSS x H
	SS x TTS SHxxxHHHHHHHxHxxHHxTTSS xSS SS HHHHH EExSSHHHHxxHxxxHHHHTTSS TTS EEE SS EExx xxxx HHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
1246-1270	VAGAADITQGLPRVIELFEARRPKA
1319-1343	VEAGQPLTRGAIDPHQLLEAKGPEA
	HHHHHHHHTT SS
	E TT BSSSSB HHHHHHHH HHH
891-933	EDEKVAWE.....LIQLDVPQEKNSLKD.LVYQAFLRLGMEKTARLLDA
958-1006	EEKKQYLEeadrkLLQIEQAYEMGFLTDrERYDQILQLWTETTEKVTQA
	S HHHHHHxxxxxT SS HHHHHHxHHHHHHHHH HHHHHHHHHH
	TTHHHHHHxxxxxHHHHHHHHHHHHHTTxT S HHHHHHHHHHHHHHHH
1097-1185	KLVDVTHEIVVREadcgTTNYISVPlfQPDEvTRSL..RLRKRADIEAgLYGRVLAR.EVEV......LGVR...LEEGRYLS....MDDVHLLIKAAEAGEIQE
1362-1458	KLHDKHIEIVVRQ....MMKYVEVT..DPGD.SRLLegQVLEKWDVEA.LNERLIAEgKTPVawkpllMGVTksaLSTKSWLSaasfQNTTHVLTEAAIAGKKDE
	HHHHHHSS B xxxxS xxEE x EESxx SSSS EE x HHHHHHHxHTT xxxxxxBBSSxxx EE SSSExxxxE TT B HHHHHHHHHH
	HHHHHHHHHHxxxxTTSEEEEExxE SSxS SSxx EEEHHHHHHxHHHHHHTTxS S xxxxxx ExxxEEE HxxxxHHHHHS S STTTTTSS
935-950	KYYGFTFSTTSGITIG
1203-1218	KCYGYDLSMARPVSIG
	HHHHHHHHHHHT
	HHH S SSSSSS TT

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