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Repeats regions & their secondary structure in the PDBID : 3h0g_A

>3h0g_A mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
1553-1569
LTSPSYSPSSPGYS.TSP
1573-1590
PSSPSYSPTSPSYSPTSP
1594-1611
PTSPSYSPTSPSYSATSP
1615-1632
PTSPSYSPTSPSYSPTSP
1636-1653
PTSPSYSPTSPSYSPTSP
1657-1674
PTSPSYSPTSPSYSPTSP
1678-1695
PTSPSYSPTSPSYSPTSP
1699-1716
PTSPSYSPTSPSYSPTSP
1720-1737
PTSPSYSPTSPSYSPTSP
1741-1752
PTSPSYSPTSPS......
x
xxxxxx
1272-1289
HMLESISLRGVpNITRVY
1318-1334
NLTEAMTVEGV.DATRTY
1337-1351
SFVEILQILGI.EATR..
HHTT SS xTT
STTTSSSS x TTT
HHHHHHHS HxHHHHxx
1458-1484
NYSLGTAVptlaGSG.MGtsqlPEGAGT
1485-1505
PYERSPMV....DSGfVG...sPDAAAF
H S xxxxSGGxGGxxxx SS
SS TTHxxxxHHHxH xxxx
1102-1116
PRLKEILNVAKNIKT
1125-1139
PWIAANMDLAKNVQT
GGHHHHHTT S S
SSS SSSTTTHHHHT
1159-1169
PDPQdtvIEED
1180-1187
PDEE...VEEN
STTxxx
T SSxxxTT S
203-500
PeKRLLSPLEVHTIFtHISSedLA...HLGLNEQY.AR..........PDWmiITVLPvPPPSVRPSISVDGtsrgeddlTHKLSDIIKANANVRRCEQ.....EGAPAHIVSEYEQLLqfhvatY..MDNEIAGQPQalqksGRPLKSIrARLKGKE...GRLRGnlMGKRVDF....SARTVITGDPNLSLDELgvpRSIAKTLTYPETVTPYNIYQLQElVRNGPDehPGA..KYIIRDTGERI..DLRYHK.RAGDIPLRYGWRVERHIRDGDVVIFnrqPSLHKMSM.MGHRI...RVMPYStFRLNlsvTSP.YNADFDGDEMNMHVPQS
514-809
P.KQIVSPQSNKPVM.GIVQdtLAgvrKFSLRDNFlTRnavmnimlwvPDW..DGILP.PPVILKPKVLWTG........KQILSLIIPKGINLIRDDDkqslsNPTDSGMLIENGEII......YgvVDKKTVGASQ.....GGLVHTI.WKEKGPEickGFFNG..IQRVVNYwllhNGFSIGIGDTIADADTM...KEVTRTVKEARRQVAECIQDAQH.NRLKPE..PGMtlRESFEAKVSRIlnQARDNAgRSAEHSLKDSNNVKQMVAAGSKGSF...INISQMSAcVGQQIvegKRIPFG.FKYR...TLPhFPKDDDSPESRGFIENS
SxS HHHHHHHxHHHSxx HxxxHHHHHSS x SxxxxxxxxxxSS xx GGGSxSBSS EE GGGSxxxxxxxx SSS TTTTHHxxxxxHHHHHHHHHHHGGGGxxxxxx xx SSSTTHHHHxxxxxHHHHHHHxHHHTT TxxxT SS xx SSSxxxxS HHHHHT SSSSxxxSTTTTSS SSEEEEEEEEETTxS TTB xxB xxHHHHTS xxB TTTxHHHHHHHHHH TTSSS EEEEE TTxxx B TTTxT S xxx SxS EExxxEE x S EEEEE SS SG
TxTTSEETTTTEES x TxxHHxxxHHHHHHHHxSTxxxxxxxxxxT ExxEETHHxHHGGGG SSS SxxxxxxxxS SB SSS EEETTHHxxxxxHHTTS SSB EE xxxxxxSxxS SS TTT xxxxxSEEE BSx EEEE xxxSHHHHxxSS TT HxxxxHHHSSSSS TTTHHHHHxxxHHHHHHHHHHHHHH GGGGxS SHHxxHHHxxHHHHHHTTTHHxxHHHHHTxTTTTT SS TTHHHHHHHHHxxxHHHHHHHHxHHHHHxxxHTTS SxS TTxxxTHHxHHH SS HHHHHHHHT
1244-1271
RIIRD.DDRKAEDDDNMIeedvfLKTiEG
1294-1316
KIVRQiEDGTFERADEWV.....LET.DG
xS SS Sxxxxx S xHH
EEEEEx SSS EEEEEEExxxxxEEEx
949-972
IFpKGDARWP...LPVNvqrIIqNALQ
973-994
IF.HLEAKKPtdlLPSD...II.NGLN
SSxS S EExxxEEESxxx HxHHHT
TSx TTS xxx xxxHHxHHHH
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Repeats regions & their secondary structure in the PDBID : 3h0g_M

>3h0g_M mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
1553-1569
LTSPSYSPSSPGYS.TSP
1573-1590
PSSPSYSPTSPSYSPTSP
1594-1611
PTSPSYSPTSPSYSATSP
1615-1632
PTSPSYSPTSPSYSPTSP
1636-1653
PTSPSYSPTSPSYSPTSP
1657-1674
PTSPSYSPTSPSYSPTSP
1678-1695
PTSPSYSPTSPSYSPTSP
1699-1716
PTSPSYSPTSPSYSPTSP
1720-1737
PTSPSYSPTSPSYSPTSP
1741-1752
PTSPSYSPTSPS......
x
xxxxxx
1272-1289
HMLESISLRGVpNITRVY
1318-1334
NLTEAMTVEGV.DATRTY
1337-1351
SFVEILQILGI.EATR..
HHHT SS xTT
STTTSSSS x TTT
HHHHHHHS HxHHHHxx
1458-1484
NYSLGTAVptlaGSG.MGtsqlPEGAGT
1485-1505
PYERSPMV....DSGfVG...sPDAAAF
H xxxx x xxxx
HxxxxHHHxHTxxxx S SGG
1102-1116
PRLKEILNVAKNIKT
1125-1139
PWIAANMDLAKNVQT
GGHHHHHTT S S
SSS SSSTTTHHHHT
1159-1169
PDPQdtvIEED
1180-1187
PDEE...VEEN
STTxxx
T SSxxxTT S
203-500
PeKRLLSPLEVHTIFtHISSedLA...HLGLNEQY.AR..........PDWmiITVLPvPPPSVRPSISVDGtsrgeddlTHKLSDIIKANANVRRCEQ.....EGAPAHIVSEYEQLLqfhvatY..MDNEIAGQPQalqksGRPLKSIrARLKGKE...GRLRGnlMGKRVDF....SARTVITGDPNLSLDELgvpRSIAKTLTYPETVTPYNIYQLQElVRNGPDehPGA..KYIIRDTGERI..DLRYHK.RAGDIPLRYGWRVERHIRDGDVVIFnrqPSLHKMSM.MGHRI...RVMPYStFRLNlsvTSP.YNADFDGDEMNMHVPQS
514-809
P.KQIVSPQSNKPVM.GIVQdtLAgvrKFSLRDNFlTRnavmnimlwvPDW..DGILP.PPVILKPKVLWTG........KQILSLIIPKGINLIRDDDkqslsNPTDSGMLIENGEII......YgvVDKKTVGASQ.....GGLVHTI.WKEKGPEickGFFNG..IQRVVNYwllhNGFSIGIGDTIADADTM...KEVTRTVKEARRQVAECIQDAQH.NRLKPE..PGMtlRESFEAKVSRIlnQARDNAgRSAEHSLKDSNNVKQMVAAGSKGSF...INISQMSAcVGQQIvegKRIPFG.FKYR...TLPhFPKDDDSPESRGFIENS
SxS HHHHHHHxHHHSxx HxxxHHHHHSS x SxxxxxxxxxxSS xx GGGSxSBSS EE GGGSxxxxxxxx SSS TTTTHHxxxxxHHHHHHHHHHHGGGGxxxxxx xx SSSTTHHHHxxxxxHHHHHHHxHHHTT TxxxT SS xx SSSxxxxS HHHHHT SSSSxxxSTTTTSS SSEEEEEEEEETTxS TT xxB xxHHHHTS xxB TTTxHHHHHHHHHH TTSSS EEEEE TTxxx B TTTxT S xxx SxS EExxxEE x S EEEEE SS SG
TxTTSEETTTTEES x TxxHHxxxHHHHHHHHxSTxxxxxxxxxxT ExxEETHHxHHGGGG SSS SxxxxxxxxS SB SSS EEETTHHxxxxxHHTTS SSB EE xxxxxxSxxS SS TTT xxxxxSEEE BSx EEEE xxxSHHHHxxSS TT HxxxxHHHSSSSS TTTHHHHHxxxHHHHHHHHHHHHHH GGGGxS SHHxxHHHxxHHHHHHTTTHHxxHHHHHTxTTTTT SS TTHHHHHHHHHxxxHHHHHHHHxHHHHHxxxHTTS SxS TTxxxTHHxHHH SS HHHHHHHHT
1244-1271
RIIRD.DDRKAEDDDNMIeedvfLKTiEG
1294-1316
KIVRQiEDGTFERADEWV.....LET.DG
xS SS Sxxxxx S xHH
EEEEEx SSS EEEEEEExxxxxEEEx
949-972
IFpKGDARWP...LPVNvqrIIqNALQ
973-994
IF.HLEAKKPtdlLPSD...II.NGLN
SSxS S EExxxEEESxxx HxHHHT
TSx TTS xxx xxxHHxHHHH
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Repeats regions & their secondary structure in the PDBID : 3h0g_B

>3h0g_B mol:protein length:1210 DNA-directed RNA polymerase II subunit RPB2
437-477
NIITNGLRYSlatGNwgDQKRSMV.NRVGVSQVLNRYTFAST
811-847
NAIVAILCYS...GY..NQEDSIImNQASIDRGLFRSIFYRT
TTTSHHHHHHxxxHSxxSS SSTTxSS S S B S
EE BEE SxxxSSxxS SS EExEEHHHHTTTTT EEEEE
348-365
PHITTMEGFETRKAFFLG
722-739
PHVHAWTHCEIHPAMILG
SS SSS SSHHHHHH
S S SEE S GGGSS
123-138
VMVAADSnVPIGE..EEW
531-547
VSVGSPS.APIIEflEEW
x xx
B SxSHHHHxxHHH
36-79
FSFDEFVQNTMQE.IVDDDSTLTLDqYAQHTGAQGDVTRRYEINF
294-337
FQMLEMMKPCIEEaFVIQDKDIALD.YIGKRGSTTGVTREKRLRY
SSSSSSTTTTHHHxHSSTT x E
HHHHHTHHHHHHTxTSS SSHHHHxHTT SSS HHHHHH
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Repeats regions & their secondary structure in the PDBID : 3h0g_O

>3h0g_O mol:protein length:297 DNA-directed RNA polymerase II subunit RPB3
144-184
LICKLRKEQEISLRciAKKGIAKEHAK..WSPTSavAFEYDPW
259-297
LVRDLDEEQPTQLS..ANELNMEENAEmnWSPYQ..NGEENTW
EEEEE SS EEEExxEEEEEE GGG xxTTS xxB
HHHHHH xx xx xx
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Repeats regions & their secondary structure in the PDBID : 3h0g_F

>3h0g_F mol:protein length:142 DNA-directed RNA polymerases I, II, and III s
10-27
NSAKDIRTEERARVQLGN
46-63
NSVETVVGKGESRVLIGN
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Repeats regions & their secondary structure in the PDBID : 3h0g_W

>3h0g_W mol:protein length:123 DNA-directed RNA polymerase II subunit RPB11
19-36
HACQC.RNANCSLPSCQKM
42-60
HTKGCkRKTNGGCPVCKQL
EEE xSSSTTEEEEEEES
HHHHHxHTGGGSTT S B
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