A Simple Perl CGI

A Simple Perl CGI

Repeats regions & their secondary structure in the PDBID : 3ith_A

>3ith_A mol:protein length:560 Reverse transcriptase/ribonuclease H

42-122	........................................................EKEGKISKIGPE.NP..YNTP.VFA..IKKKDStkWrKLVDFRELNKRTQdfWEVQLgipH.PaGLKKKKSVTVLDvG....DAYFS..VPLDE
169-297	EPFKkqNPDIVIYQYMDDLYVGsdlEIGQHRTKIEEL.RQHLLRWGlTTPDKKH..QKEPPFLWMGYELHPDKWTVQ.PIV..LPEKDS..W.TVNDIQKLVGKLN..WASQI...Y.P.GIKVRQLCKLLR.G....TKALTEVIPLTE
344-471	EPFK..NLKTGKYARMRGAHTN...DVKQLTEAVQKItTESIVIWG.KTPKFKLpiQKETWETWW.TEYWQATWIPEwEFVntPPLVKL..W.YQLEKEPIVG......AETF...YvD.GAANRE.TKLGK.AgyvtNKGRQKVVPLTN
	xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTTSB S x xx BB x xx TTTTxxTx THHHHTxxTB xxx x x SS GGG x xxxx SEEExxEEE S
	HHHHxxHH SS EEEEETTEEExxxEEE S HHHHHHxHHHHHHHHxHHHTT xx SS TT SS EEETTEEEETxTEExxEE xx x S HHHHHHxxHHHHHxxxHxHxHTTTSTT TTxGxxxxGGS SS TTS
	ETTExxEEEEEEE SSEE xxxHHHHHHHHHHHHxHHHHHHHHxSS EEExxESS HHHHHxHHHTT SS x SxxEEE xxSxS S B xxxxxxSS xxxSxSxSEEEEExEEEE xTxxxxTT EEEEEEE T

Repeats regions & their secondary structure in the PDBID : 3ith_C

>3ith_C mol:protein length:560 Reverse transcriptase/ribonuclease H

42-122	........................................................EKEGKISKIGPE.NP..YNTP.VFA..IKKKDStkWrKLVDFRELNKRTQdfWEVQLgipH.PaGLKKKKSVTVLDvG....DAYFS..VPLDE
169-297	EPFKkqNPDIVIYQYMDDLYVGsdlEIGQHRTKIEEL.RQHLLRWGlTTPDKKH..QKEPPFLWMGYELHPDKWTVQ.PIV..LPEKDS..W.TVNDIQKLVGKLN..WASQI...Y.P.GIKVRQLCKLLR.G....TKALTEVIPLTE
344-471	EPFK..NLKTGKYARMRGAHTN...DVKQLTEAVQKItTESIVIWG.KTPKFKLpiQKETWETWW.TEYWQATWIPEwEFVntPPLVKL..W.YQLEKEPIVG......AETF...YvD.GAANRE.TKLGK.AgyvtNKGRQKVVPLTN
	xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHTSEEE S x xx BB xEE xx SSSxxSx EE HHHHTxxTB xxx x x SS GGGSBx xxxx SEEExxEEE S
	HHHHxxHH TT EEEEETTEEExxxEEESS TTHHHHxHHHHHHHHxHHHTT xx S SS TTT EETTEEE SxSEExxEE xx x S HHHHHHxxHHHHHxxxHxHxHHTTSS SSxSxxxxGGGSTT STT
	ETTExxEEEEEEEE SSSEE xxxHHHHHHHHHHHHxHHHHHHHHxSS EEExxESS HHHHHxHHHHH SS x SxxEEE xxSxS S xxxxxxSS xxxTxTxSEEEEExEEEE xTxxxxTT EEEEEEEET

Repeats regions & their secondary structure in the PDBID : 3ith_B

>3ith_B mol:protein length:427 p51 RT

169-229	EPFKkqNPDIVIYQYMDDLYVGsdlEIGQHRTKIEEL.RQHLLRWGlTTPDKKH..QKEPPFLW
344-401	EPFK..NLKTGKYARMRGAHTN...DVKQLTEAVQKItTESIVIWG.KTPKFKLpiQKETWETW
	HHHHxxHS SSSEEEEETTEEExxxEEE S HHHHHHxHHHHHHHHxHHHTS xx
	STT xxEEEEEEE SSS xxxHHHHHHHHHHHHxHHHHHHHHxS EEExxESS HHHH
25-71	PLTEEKIKALVEiCTEMEKEgKISKIgPENPYNTPVFAIKKKDSTKW
294-337	PLTEEAELELAE.NREILKE.PVHGV.YYDPSKDLIAEIQKQGQGQW
	HHHHHHHHHxHHHHHHHxTTSEExE TT B EEEE SSS
	HHHHHHHHHxHHTTTTSx SS x TTS EEEEEE SSS E

Repeats regions & their secondary structure in the PDBID : 3ith_D

>3ith_D mol:protein length:427 p51 RT

169-229	EPFKkqNPDIVIYQYMDDLYVGsdlEIGQHRTKIEEL.RQHLLRWGlTTPDKKH..QKEPPFLW
344-401	EPFK..NLKTGKYARMRGAHTN...DVKQLTEAVQKItTESIVIWG.KTPKFKLpiQKETWETW
	HHHHxxHS TT EEEEETTEEExxxEE S HHHHHHxHTHHHHHHxHHTTS xx
	ETTExxEEEEEEE SSS xxxHHHHHHHHHHHHxHHHHHHHHxSS EEExxESS HHHH
25-71	PLTEEKIKALVEiCTEMEKEgKISKIgPENPYNTPVFAIKKKDSTKW
294-337	PLTEEAELELAE.NREILKE.PVHGV.YYDPSKDLIAEIQKQGQGQW
	HHHHHHHHHxHHHHHHHxTTSEExE TT B EEEE GGG
	TTTHHHHHHxHHHHTTSx x TTS EEEEEE STT E