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Repeats regions & their secondary structure in the PDBID : 3k1f_A

>3k1f_A mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
1537-1554
VSSPGFSPTSPTYSPTSP
1558-1575
PTSPSYSPTSPSYSPTSP
1579-1596
PTSPSYSPTSPSYSPTSP
1600-1617
PTSPSYSPTSPSYSPTSP
1621-1638
PTSPSYSPTSPSYSPTSP
1642-1659
PTSPSYSPTSPSYSPTSP
1663-1680
PTSPSYSPTSPSYSPTSP
1684-1701
PTSPSYSPTSPNYSPTSP
1705-1719
PTSPGYSPGSPAYSP...
xxx
1463-1494
EDGQDGGVTPYSN.ESGLVNADLDVKDELMFSP
1501-1533
NDAMAGGFTAYGGaDYGEATSPFGAYGEAPTSP
x
x
995-1039
ENLLVLRGKNeIIQNAQRDAVTLFCCllrSRLATRR.VLQEYRL..TK
1062-1102
EMVGVLAAQS.IGEPATQMTLNTFHF...AGVASKK.VTSGVPR..LK
1103-1144
EILNV..AKN.MKTPSLTVYLEPGHA...ADQEQAKlIRSAIEHttLK
HH S SSxHHHHHHHHHHHHHHHxxxHHHHHHSx HHHHTTxxTS
HHHHHHHHxHHHHHHT xxx x SHHHxxHH
HHHTTxx SSx SS EEEEEE GGGSxxxS HHHHHxHHHHHHSxx E
308-333
IAGQPQ.ALQKSGRPvKSIRARLKGKE
353-378
ISGDPNlELDQVGVP.KSIAKTLTYPE
SSS Bx BTTS x HHHHH SS
EEEESSxS TTEEEExEHHHHTTSEEE
1241-1277
RVVRPK......SLDAETEAEEDHMLKKIENTMLENITLRGVE
1281-1323
RVVMMKydrkvpSPTGEYVKEPEWVLETDGVNLSEVMTVPGID
xxxxxx TTTHHHHHHHHHTT EEES T
EEEEExxxxxxEEEEEE TTSSEEEEEEEEEEEES HHHHT
153-199
PSEDDPTQLVSR..GGCGNTQPTIRKDGLKLVGSWKKDRATGDADePEL
396-443
PNEHPGAKYVIRdsGDRIDLRYSKRAGDIQLQYGWKVERHIMDND.PVL
E SS TTSEEE xxSS B EEETTEEEE x
TTSSS EEEEE xxTTS EEETTT TTTTT TT EEEEE TxT E
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Repeats regions & their secondary structure in the PDBID : 3k1f_B

>3k1f_B mol:protein length:1224 DNA-directed RNA polymerase II subunit RPB2
628-716
TDAGRVY...RPLFIVEDDESLGHKELKVrkGHIAKLMATEYqdieGGF..EDVEEYTWSSlLNEGLVE......YIDAEEEESILIAMQPEdlEPAEAN
791-881
TMANILYypqKPLGTTRAMEYLKFRELPA..GQNAIVAIACY....SGYnqEDSMIMNQSS.IDRGLFRslffrsYMDQEKKYGMSITETFE..KPQRTN
SS EExxxEEEEE S SSSSS S xx HHHHHHHHHHxxxxHHHxx x HHHHxxxxxxHHTTSEEEE TTGGGT xx EES T
SSEEEESxxxS B SEE TTHHHHTTTTxxS SSEEEEEE xxxxB xxSS S TT EExEEHHHHHxxxxxxTTTT EEEEEEEEEE xx SSS
141-169
DVPGRELkYELIAEESED.....DSESGKVFIGR
304-336
DVNDWQM.LEMLKPCVEDgfviqDRETALDFIGR
x xxxxx EEEE
TT HHHxHHHHHHHHHHxxxxxHTT SHHHHH
98-119
TKPMVNesdGVTHALYPQEARL
578-596
TRVFVN...GVWHGVHRNPARL
S EExxx TTS EE HHH
EEEEESxxxS EEEEES HHHH
474-539
SSRAG.VSQVLNRYTYSS.TLSHLRRTNTPIGRDG.KLAKpRQLHNTHWGLVCPAETPEGQACGLVKNL
943-1010
STENGiVDQVLVTTNQDGlKFVKVRVRTTKIPQIGdKFAS.RHGQKGTIGITYRREDMPFTAEGIVPDL
TS Sx SEE SSHHHxHHHHHSEEE x TxTTS GGGTTTB SS SSSSTTTSEE
SS EExEEEEEEEE SSx EEEEEEEEEE xTT ExEEETTTEEEEEEEEE STTS B TT
283-298
VIIFRALGIIPDGEIL
910-925
VIIGKTTPISPDEEEL
HHHHHHHT HHHHH
EEE EEE S SS
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Repeats regions & their secondary structure in the PDBID : 3k1f_C

>3k1f_C mol:protein length:318 DNA-directed RNA polymerase II subunit RPB3
165-191
KEHAK.WGPAAAIEFEyDPWNKLKHTDY
195-221
QDSAKeWPQSKNCEYE.DPPNEGDPFDY
TT GGxG SS EEEExE SS S S
S HHHxHS GGGTTxS SS
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Repeats regions & their secondary structure in the PDBID : 3k1f_D

>3k1f_D mol:protein length:221 DNA-directed RNA polymerase II subunit RPB4
20-31
EEENAATLQLGQ
43-54
EEEELIALNLSE
TTT T
EEEE B TTH
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Repeats regions & their secondary structure in the PDBID : 3k1f_E

>3k1f_E mol:protein length:215 DNA-directed RNA polymerases I, II, and III s
31-60
TQEEV.ELP.LEDFKAKYCDSMGRPQRKMMSF
65-96
TEESIsKFPdMGSLWVEFCDEPSVGVKTMKTF
HHHHxT xHHHHHHHHB SS B GGGT E
HHHHxHH xTT EEEEE SEE HHHHH
126-169
SIPPaTIETFNEAALVVNITHHELVpKHIRLSSDEKRelLKRYR
173-212
SQLP.RIQRADPVALYLGLKRGEVV.KIIRKSETSGR..YASYR
TSSSx EEEEEEHHHHSS STTSTTx B B HHHxxHHHHH
TTS xEE TT HHHHHTT TT EExEEEEEETTTEExxEEEEE
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Repeats regions & their secondary structure in the PDBID : 3k1f_F

>3k1f_F mol:protein length:155 DNA-directed RNA polymerases I, II, and III s
10-23
DGneNFEDFDVEHF
140-151
DG..SFEDWSVEEL
xx
TSxx EEEEETTTS
63-75
QIRRKTLKEKAIP
119-131
RIAMKELAEKKIP
B
HHHHHHHHTT
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Repeats regions & their secondary structure in the PDBID : 3k1f_H

>3k1f_H mol:protein length:146 DNA-directed RNA polymerases I, II, and III s
33-51
QDQcklTLDINVELFPVAA
52-70
QDSltvTIASSLNLEDTPA
SSxxx EEEEEEETTTS
S ExxxEEEE S
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