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Repeats regions & their secondary structure in the PDBID : 3k1q_A

>3k1q_A mol:protein length:1299 VP1, the protein that forms the mRNA-capping
659-694
.FGGRQSNG.ALRSTT.ALQRALLSLYARN......AAIDRAVTH..........
697-744
.FFGVPDDG.TSDLGI.DAVRLFDPMFSDA.VANLPSNALASLV.SRVVPS..SI
745-795
MFTRVPSNG.PVSTTI.YGKRTFLSNRRRArLRDVPMLITTTLVHQRRFTT..PP
796-848
TFTLFSSEAvPVTTLVaAGYNSFISEQTRN..PNLAHLLDLGTGPECRILSliPP
xEEEESS x HxHHHHHHHHHHHHHxxxxxxHHHHHHHTTxxxxxxxxxx
x TT Sx SSSEExEEEEEES SxTT HHHHHHHHHHxHHH SSxx
EEEE SSxS EEEExEEEE HHHHHHHHxH S EEEE THHHHT S Bxx
BSS S x HHHHHxHHHHHHHHHHTSTxxTTT EEEEES TT THxxHH
7-27
IQLVPKLNTSTTRRTFL..PLRF
59-81
IQTYPPLNAWSPHHAFIenPLDY
EEEEEEE B xx BH
EEEBTTBTT TTHHHHxx S
953-1019
............DHVYRFNGGE..RVEPYADPVPLQQA....IAALLPA.AALS...............WHTLSPTCDWLP.YIIGVGSPLNLS.D..INTAISY
1020-1096
SRLTPIlhidttTPPLRVN........PV..PTPLNQQcairITSLDPA.AVLS..............vQHNGVEVIGGTPgNVISVAGAAALQ.Y..ILANQEF
1098-1165
LQFTPT.lpgifD.VFLTTLG.....QP...PVP.RGS....FTITPPP.TTVA...............LNMPPPR..QLD.F.TDVGNDARITcDpyYQLAV..
1168-1231
.................FKDGQyvRVNPEKASVVT...................napnrdlhfvldladNHVLLYLCDVTP.SGLGDRIAFPIV.D..IYR.IAF
1232-1292
PRNTPV.....rASLPYTGGGA..HLTSGGNPFMSLTT....PPAVLPAgVALA...............ALSTSVATQYPT.YTLPAG.................
xxxxxxxxxxxxTTEEEETTTTxxEEEEB HHHHHHHxxxxHHHH xSEEExxxxxxxxxxxxxxxE TTT TTHHHxHHHTTT B HHxHxxHHHHHHH
HTSS xxxxxxEEEESSSxxxxxxxx xx SxxxxSTTTT ExEEEExxxxxxxxxxxxxxx S SS EExETTEEEE SS xTxxT SSS
EEE xxxxxxSx EEEEEExxxxx xxxSTTx Sxxxx EEEEEExE xxxxxxxxxxxxxxx EEE xx SxSxS SSS ExExxEEEEExx
xxxxxxxxxxxxxxxxxEETTExxEEE TTTEEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxE SSSSEEEEE x GGGGG EExExx SxSSS
SSS ExxxxxxEE SSS Bxx EETTEE S BSxxxx SS xTT ExxxxxxxxxxxxxxxE SS SSSSSx EEE xxxxxxxxxxxxxxxxx
381-402
FPFTTGSYTVVPDAS.RPLRLLP
432-454
FCVTGGVFTSIYDISgDPTAYPP
B B xS EE
SBS EEEEE xS SS
218-248
ANlAAGPTVLEHFDSpTYGPHLLL.PQTGDVL
274-303
AN.ASASTAVTRLDQ.SYHPVTSFdPSTFNTL
HHx S S EEE Sx TTSSEExEEE S
HTx SSS BS SS x EEE TT x SS S
329-346
TMSDVRSfVARLMAEGDP
853-869
TMSDSRP.CAELMASFDP
BHHHHHHxHHHHHSS
EEE S x SSSSS T
565-574
DLSRAVPTGT
581-590
DLDQVEDAGT
TTS
E S TT
899-908
IGAAAAAAGT
918-927
IPRIVAAGGT
HHHHHHHHT
HHHHHTTT
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Repeats regions & their secondary structure in the PDBID : 3k1q_B

>3k1q_B mol:protein length:1027 VP3A, the building block protein of inner she
206-253
ALTLHIRETYIMLLRSMHQDPTQIVQIVnECANNLLNSTIPISLRPTI
259-305
ASSEDLRLQEVMHLVNISSNTAAALPLV.EALSTLLRSVTPLVLDPTV
HHHHHHHHHHHHHHHHH HHHHHHHHxHHHHTTTSEEE
HHHHHHHHHHHHHHS S GGGHHHHHxHHHHHHHHHH B TTH
392-552
PHSPVKVFMALANLLAQpepIAIGVPGMHQTTpasqFSHPGVWPPG...FLNPQlINPQQAPLLRAFAEHIRANWPQpsefGYG..........STLQGSANLFiPSNRMVYPWPNQPLPRLTVAPTYDSAMSNWISTTiAFFIRvvnsvNMTATVndlTRRTMTGVMTAMRQV.........
607-696
.................................................................................GDAAVD..IRATHATFAAALPVD.PAAIVVAMLCGQTETNLIPSHHYGKAFAPLFASN.AMFTR.....NQRAVI...TREAFVCARSAVAQCQDAGFLVPR
697-836
PLDALRQFDVTSAAAAE...IMHAVNDAFKTA....FDLDGALLDGlalYGDPR.IADLSAAYLQYGGNVVREHVPP....GPSHIHraLQQVESTFMAEMNLF.NVARGNLYLV.QTATNGNWSPMAPVA.AP............................PFVRGGPNVRVVGRFGTIVPR
TTHHHHHHHHHHHHTTTxxxTS SGGG xxxxTTS GGG SxxxGGG xHHHH GGGS TTT HHHHHHHHxxxxHHHxxxxxxxxxxHH EEEEx SBTTTB SSS TTEEEESS S x HxxxxxHHHHHHxxxHHHHHHHHHHH HHHxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx HHHHxxHHHHSEE EEE xHHHHHHHHHS B TT HHHHHHHHHTTGGG TxHHHHHxxxxxHHHHHHxxxHHHHHHHHHHHHTTTS SS
TTS HHHHHHxxxHHHHHHHHHHHHxxxxTT S STHxxxHHHSSx S EEEEEETTTEE EExxxx xxHHHHHHHHHHHHHHHxHGGGGTEEESx EEEEEEEESS TxTSxxxxxxxxxxxxxxxxxxxxxxxxxxxx SS STTSTTEEE SS
314-337
SESTTQTISPISEI.LRLLQPMGND
367-391
SQSITHLPSMWKCLfLTLAGPMTSD
TT HHHHHxHHHT S S T
STT HHHHHHHHxHHHHHGGGSS
841-884
EPQLIDDgNVPrdIAGDW...VYPSDVLQVSVAVFRDYVWPMVKAGR
902-945
DPQISLD.EAP..ILEEWlskINPAGIPPVPFCIPIPQVYPCITARR
EEE TxTS xxEEES xxxEEEEEEHHHHHHTHHHHHHHTHHHHH
TTS EEx HHxxHHHHHxxxHHH BTTBB EEEEEE SS
557-576
PFYIQHMCPTELSVLASVTV
579-598
PFQVPFTRLVQNDVITNVLV
HHHHHHTHHHHHHHHHHH S
SS GGG EEEEEE
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Repeats regions & their secondary structure in the PDBID : 3k1q_C

>3k1q_C mol:protein length:1196 VP3B, the building block protein of inner she
4-215
.................................................................................................................................................................................................................VPAKDAPTTNSPPSTTSPNQ.AAadanQQ............................................QAGIVSSQSGPNAVGD..SAPSSSVNNDGDIITRPT....SDSIAAVANATkpAAVVSdPQSmKVTPIVNP..SSYVC.NVCNARFSTMSALSEHLRSDHRDDAS.TLLATPMINNAIrsFLTAWDDIrILSPDVSSK....SLSAyLDSAVANGPELIIEdtglctsfmlldnIPSAHLTKELIGFT......W...F......................MQMYQMTP
216-615
PLPEGAVNRIvcMTNWASLGDEGRG..LE..VRLPPPTDSSVHAY.KTVLSRgyIDNAQFNPLALrSNVLLMLLQFTLSNL.KINKSSTfTSDVTTIT.SGRM..IRAFEG.RPELLALAYPGR.AVLPTQTKNAQFLSTaiadrIGRLDRANLIGGEVSAMVECMELCDAlTLHIRETYIMLLRSMHQDPTQIVqIVNECANNLLNsTIPISLRPTILCPWFASSEDL.RL....QQ............................................VMHLVNISSNTAAALPlvEALSTLLRSVTPLVLDPTV..LTNAITTISEST..TQTIS.PIS.EILRLLQPmgNDYAAfWKCIASWAYNGLVTTVLSEDAFPDSSqSITHLPSMWKCL..FLTLAGPM.TSDPHSPVK....VFMA.LANLLAQPEPIAIG.............VPGMHQTTPASQFS..HPGVWPPgF......................LNPQLINP
619-1015
PLLRAFAEHI..RANWPQPSEFGYGstLQgsANLFIPSNRMVYPWpNQPLPR..LTVAPTYDSAM.SNWISTTIAFFIRVVnSVNMTAT.VNDLTRRTmTGVMtaMRQVKTmTPFYIQHMCPTElSVLASVTVTPPFQVP.....FTRLVQNDVITNVLVARVDPAQRGDA.AVDIRATHATFAAALPVDPAAIV.VAMLCGQTETN.LIPSHHYGKAFAPLFASNAMFtRN....QRavitreafvcarsavaqcqdagflvprpldalrqfdvtsaaaaeIMHAVNDAFKTAFDLD.....GALLDGLA.LYGDPRIadLSA.........................................AYLQYGG...NVVREHVPP.......................GP...SHIHRALQqvesTFMA.EMNLFN....VARG.............NLYLVQTATNGNWSpmAPVAAPP.FvrggpnvrvvgrfgtivprpngLEPQLID.
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHTTSS S HxHHxxxxHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHS TT SS xx TT TTB TTS B xxxxSS HHHHHHHHxxHGGG x TxT S xx S xSSS TTTT SSSS SHHHHHHHHHxHTSSTT S S xx SS S xEEEE TT xxxxEE x S S SS SS Sxxxxxxxxxxxxx S EE xxxxxxSxxx xxxxxxxxxxxxxxxxxxxxxx SEEEEE
SS EEEEEExxEEBTTTT SS xx Sxx B TTS GGGxGG SSGxxGGS SS B xGGGHHHHHHHHHHHHxHHHH ExE EEEx SSxxSSTT ExEE SSS SHHxHH GGGS SSHHxxxxxHHHHHHS GGGSEEEEE STT xS EEEEEE HHHHHHHHHHHHHxHHHTB HHHHxHHHHHHHTTTSEEEE S xTTxxxxB xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx B HHHHHHHHHHxxHHHTTTT HHHHHHHHHHHxxHHHHHHH EEExx THHHxHHHxHHH SSSSxxTT TTxHHHHHHHHH TT HHHHHHHHHHHxTT SSSEEEE GxxGGS TT x TT HHHHHxxxxHHHHxHHHHGGGSS TTHHxxxxxxxxxxxxxHHHHHHHHHHTBTTxxB SxTxxxxxxxxxxxxxxxxxxxxxxT TT G
HHHHHHHHHHxxHHHS EEEE xxBTxxTTB S SSS TTEExEESS xx S S xTTSHHHHHHHHHHHHxHHHHHHTx TT TT xS HHxxHHHHHHxHHHHHHS HHxHHHHHHHHHHHHHHHxxxxxHHSSS SS GGGSEEEEEExESS SSSS B GGGG SSSSx EEEE HHHHHxHHHHSEEE TT HHHHHHHHxHHxxxxHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHT HHHHHHHHHHHxxxxxHHHHHHHHxHHHTTTTxxT xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSS TTxxxTTS xxxxxxxxxxxxxxxxxxxxxxxHHxxxHHHHHHHHxxxxHHHHxHHHHTTxxxx SxxxxxxxxxxxxxTTTGGGGSS Sxx EEEEExExxxxxxxxxxxxxxxxxxxxxxTTTEEEEx
1020-1053
PrdIAGDW...VYPSDVLQVSVAVFRDYVWPMVKAGR
1080-1114
P..ILEEWlskINPAGIPPVPFCIPIPQVYPCITARR
ExxEES BxxxEEEEEHHHHHHSHHHHHHHHHHHHHT
HxxHHHHHxxxHHT TT B EEEEEE SS
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Repeats regions & their secondary structure in the PDBID : 3k1q_D

>3k1q_D mol:protein length:412 VP6A and VP6B, the clamping proteins
52-103
PVWS.ARYPSVASRNIVVNTLLGAHLNPFagGQiTSHQGITWrdpVLSSLAPV
110-156
PVWAvAENVLLDSNNYPTYVLNLSSMWPI..NQ.DVHIMTMW...ALSDQGPI
S xSS SSHHHHHHHHHHHHHHHHHHHxxTSxTT SSxxxEEEETTTT
S x S EE GGGSHHHHHTHHHHHHxxHHxHHHHHHHHxxxHHTSSSS
162-190
PVDPMPAATTAAlMAYTGVPIAhLAQTAY
385-411
PIQPFNAADFGQ.AGQTAAAVA.LAQAMF
E S HHHHHHxHHHTTTSBHxHHHHHH
S B GGGG Sx TTHHHHHHxHHHHHH
239-253
PALnPDQAVL.KWNDG
297-311
PAL.IDEATLpAWSQG
SSSxS EEExEEE
SS x GGGSx GGGS
327-339
DYNPVPMAAARHL
358-370
DYTAYALTIERHL
EE HHHHHHHHHH
HHHHHHHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 3k1q_E

>3k1q_E mol:protein length:412 VP6A and VP6B, the clamping proteins
52-103
PVWS.ARYPSVASRNIVVNTLLGAHLNPFagGQiTSHQGITWrdpVLSSLAPV
110-156
PVWAvAENVLLDSNNYPTYVLNLSSMWPI..NQ.DVHIMTMW...ALSDQGPI
TT xSS SSHHHHHHHHHHHHHHHTGGGxxGSxTT SSxxx EESSTT
x S EEEGGG HHHHHTHHHHHHxxHHxHHHHHHHHxxxHHSSSSEE
162-190
PVDPMPAATTAAlMAYTGVPIAhLAQTAY
385-411
PIQPFNAADFGQ.AGQTAAAVA.LAQAMF
SS HHHHHHxHHTTTT BHxHHHHHH
S GGGG Sx TTHHHHHHxHHHHHH
239-253
PALnPDQAVL.KWNDG
297-311
PAL.IDEATLpAWSQG
SSSxSS ExEEEE
S xEESTTSx GGG
327-339
DYNPVPMAAARHL
358-370
DYTAYALTIERHL
SHHHHHHHHHH
HHHHHHHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 3k1q_F

>3k1q_F mol:protein length:276 VP7: protector protein (outer shell)
10-59
AHA.MVRAAAAGRLTLYTRTRTeTTNFD..HAEYVTCgrYTIcAFCLTTLAPH
202-250
AHAtAVVATAATRAILMHDLLT.SANADdgHQARSAC..YGP.AFNNLTFACH
HHHxHHHHHHTS BBTTBSxS SSxx SBEExxETTxEEE TTTSSB
EESxS THHHHHHHHHHHHHHHxHSSS xx STHHHHxxHHHxS S SSS
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Repeats regions & their secondary structure in the PDBID : 3k1q_G

>3k1q_G mol:protein length:276 VP7: protector protein (outer shell)
10-59
AHA.MVRAAAAGRLTLYTRTRTeTTNFD..HAEYVTCgrYTIcAFCLTTLAPH
202-250
AHAtAVVATAATRAILMHDLLT.SANADdgHQARSAC..YGP.AFNNLTFACH
HHHxHHHHHHTS BBTTBSxS SSxx SBEExxETTxEEE TTTSSB
EESxS THHHHHHHHHHHHHHHxHSSS xx STHHHHxxHHHxS S SSS
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Repeats regions & their secondary structure in the PDBID : 3k1q_H

>3k1q_H mol:protein length:276 VP7: protector protein (outer shell)
10-59
AHA.MVRAAAAGRLTLYTRTRTeTTNFD..HAEYVTCgrYTIcAFCLTTLAPH
202-250
AHAtAVVATAATRAILMHDLLT.SANADdgHQARSAC..YGP.AFNNLTFACH
HHHxHHHHHHTS BBTTBSxS SSxx SBEExxETTxEEE TTTSSB
EESxS THHHHHHHHHHHHHHHxHSSS xx STHHHHxxHHHxS S SSS
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Repeats regions & their secondary structure in the PDBID : 3k1q_L

>3k1q_L mol:protein length:276 VP7: protector protein (outer shell)
10-59
AHA.MVRAAAAGRLTLYTRTRTeTTNFD..HAEYVTCgrYTIcAFCLTTLAPH
202-250
AHAtAVVATAATRAILMHDLLT.SANADdgHQARSAC..YGP.AFNNLTFACH
HHHxHHHHHHTS BBTTBSxS SSxx SBEExxETTxEEE TTTSSB
EESxS THHHHHHHHHHHHHHHxHSSS xx STHHHHxxHHHxS S SSS
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Repeats regions & their secondary structure in the PDBID : 3k1q_M

>3k1q_M mol:protein length:276 VP7: protector protein (outer shell)
10-59
AHA.MVRAAAAGRLTLYTRTRTeTTNFD..HAEYVTCgrYTIcAFCLTTLAPH
202-250
AHAtAVVATAATRAILMHDLLT.SANADdgHQARSAC..YGP.AFNNLTFACH
HHHxHHHHHHTS BBTTBSxS SSxx SBEExxETTxEEE TTTSSB
EESxS HHHHHHHHHHHHHHHxHSSS xx STHHHHxxHHHxS S SSS
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Repeats regions & their secondary structure in the PDBID : 3k1q_N

>3k1q_N mol:protein length:276 VP7: protector protein (outer shell)
10-59
AHA.MVRAAAAGRLTLYTRTRTeTTNFD..HAEYVTCgrYTIcAFCLTTLAPH
202-250
AHAtAVVATAATRAILMHDLLT.SANADdgHQARSAC..YGP.AFNNLTFACH
HHHxHHHHHHTS BBTTBSxS SSxx SBEExxETTxEEE TTTSSB
EESxS THHHHHHHHHHHHHHHxHSSS xx STHHHHxxHHHxS S SSS
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Repeats regions & their secondary structure in the PDBID : 3k1q_R

>3k1q_R mol:protein length:276 VP7: protector protein (outer shell)
10-59
AHA.MVRAAAAGRLTLYTRTRTeTTNFD..HAEYVTCgrYTIcAFCLTTLAPH
202-250
AHAtAVVATAATRAILMHDLLT.SANADdgHQARSAC..YGP.AFNNLTFACH
HHHxHHHHHHTS BBTTBSxS SSxx SBEExxETTxEEE TTTSSB
EESxS THHHHHHHHHHHHHHHxHSSS xx STHHHHxxHHHxS S SSS
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Repeats regions & their secondary structure in the PDBID : 3k1q_S

>3k1q_S mol:protein length:276 VP7: protector protein (outer shell)
10-59
AHA.MVRAAAAGRLTLYTRTRTeTTNFD..HAEYVTCgrYTIcAFCLTTLAPH
202-250
AHAtAVVATAATRAILMHDLLT.SANADdgHQARSAC..YGP.AFNNLTFACH
HHHxHHHHHHTS BBTTBSxS SSxx SBEExxETTxEEE TTTSSB
EESxS THHHHHHHHHHHHHHHxHSSS xx STHHHHxxHHHxS S SSS
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Repeats regions & their secondary structure in the PDBID : 3k1q_T

>3k1q_T mol:protein length:276 VP7: protector protein (outer shell)
10-59
AHA.MVRAAAAGRLTLYTRTRTeTTNFD..HAEYVTCgrYTIcAFCLTTLAPH
202-250
AHAtAVVATAATRAILMHDLLT.SANADdgHQARSAC..YGP.AFNNLTFACH
HHHxHHHHHHTS BBTTBSxS SSxx SBEExxETTxEEE TTTSSB
EESxS THHHHHHHHHHHHHHHxHSSS xx STHHHHxxHHHxS S SSS
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Repeats regions & their secondary structure in the PDBID : 3k1q_Y

>3k1q_Y mol:protein length:276 VP7: protector protein (outer shell)
10-59
AHA.MVRAAAAGRLTLYTRTRTeTTNFD..HAEYVTCgrYTIcAFCLTTLAPH
202-250
AHAtAVVATAATRAILMHDLLT.SANADdgHQARSAC..YGP.AFNNLTFACH
HHHxHHHHHHTS BBTTBSxS SSxx SBEExxETTxEEE TTTSSB
EESxS THHHHHHHHHHHHHHHxHSSS xx STHHHHxxHHHxS S SSS
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Repeats regions & their secondary structure in the PDBID : 3k1q_I

>3k1q_I mol:protein length:639 VP5: membrane-penetration protein (outer shel
6-55
GDGNSFTPTSDMT.STAAPAIDLKPGVLNPTGK...LWR...PVGTSVATIDS.LAI.V
231-283
GAFNA..ATSEVG.SLVGSSSTLSQAISTMAGKdldLIEadtPLPVSVFT.PS.LAP.R
303-344
...NSSLIRKTLTySGATYTVQLGPG...PT.......R...VIDMN.AMIDSvLTLdV
S B BGGG x HHHH ExxxEEExxxSTTSSTTGGG x EEx
HHHHSxx SS Sx HHHHHHHHHHHHHHHHHTxxxTTGxxxGG SS ExEHxHHHx
xxxSS EEEEEExETTEEEEEEE Sxxx xxxxxxxSxxx EE xSS SxEEExE
135-164
NLQRTIAARMRDVALwqkHLDTAMTMLTPD
189-215
NLCLTYPNEFYNVAI...HRYPALKPGNPD
HHHHHHHHHHHHHHHxxxHHHHHHHHHHHT
SHHHHSHHHHHHHHHxxxHH TTB SSTT
460-493
VLLRETTYK.GEVVDAIVPatvMANQTSEEVASAL
499-530
VLVSNHLNKlANVVGDAIP...VASRTDDSATSAI
SS BTxTB SEE HxxxHHHTT B HHHHH
HHHHHHHHHxHHHHHHHHSxxx STT GGGHH
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Repeats regions & their secondary structure in the PDBID : 3k1q_J

>3k1q_J mol:protein length:639 VP5: membrane-penetration protein (outer shel
6-55
GDGNSFTPTSDMT.STAAPAIDLKPGVLNPTGK...LWR...PVGTSVATIDS.LAI.V
231-283
GAFNA..ATSEVG.SLVGSSSTLSQAISTMAGKdldLIEadtPLPVSVFT.PS.LAP.R
303-344
...NSSLIRKTLTySGATYTVQLGPG...PT.......R...VIDMN.AMIDSvLTLdV
S B BGGG x HHHH ExxxEEExxxSTTSSTTGGG x EEx
HHHHSxx SS Sx HHHHHHHHHHHHHHHHHTxxxTSGxxxGG SS ExEHxHHHx
xxxSS EEEEEExETTEEEEEEE SxxxS xxxxxxxSxxx EE xSS SxEEExE
135-164
NLQRTIAARMRDVALwqkHLDTAMTMLTPD
189-215
NLCLTYPNEFYNVAI...HRYPALKPGNPD
HHHHHHHHHHHHHHHxxxHHHHHHHHHHHT
SHHHHSHHHHHHHHHxxxHH TTB SSTT
460-493
VLLRETTYK.GEVVDAIVPatvMANQTSEEVASAL
499-530
VLVSNHLNKlANVVGDAIP...VASRTDDSATSAI
SS BTxTB SEE HxxxHHHTT B HHHHH
HHHHHHHHHxHHHHHHHHSxxx STT GGGHH
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Repeats regions & their secondary structure in the PDBID : 3k1q_K

>3k1q_K mol:protein length:639 VP5: membrane-penetration protein (outer shel
6-55
GDGNSFTPTSDMT.STAAPAIDLKPGVLNPTGK...LWR...PVGTSVATIDS.LAI.V
231-283
GAFNA..ATSEVG.SLVGSSSTLSQAISTMAGKdldLIEadtPLPVSVFT.PS.LAP.R
303-344
...NSSLIRKTLTySGATYTVQLGPG...PT.......R...VIDMN.AMIDSvLTLdV
S B BGGG x HHHH ExxxEEExxxSTTSSTTGGG x EEx
HHHHSxx SS Sx HHHHHHHHHHHHHHHHHTxxxTSGxxxGG SS ExEHxHHHx
xxxSS EEEEEExETTEEEEEEE SxxxS xxxxxxxSxxx EE xSS SxEEExE
135-164
NLQRTIAARMRDVALwqkHLDTAMTMLTPD
189-215
NLCLTYPNEFYNVAI...HRYPALKPGNPD
HHHHHHHHHHHHHHHxxxHHHHHHHHHHHT
SHHHHSHHHHHHHHHxxxHH TTB SSTT
460-493
VLLRETTYK.GEVVDAIVPatvMANQTSEEVASAL
499-530
VLVSNHLNKlANVVGDAIP...VASRTDDSATSAI
SS BTxTB SEE HxxxHHHTT B HHHHH
HHHHHHHHHxHHHHHHHHSxxx STT GGGHH
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Repeats regions & their secondary structure in the PDBID : 3k1q_O

>3k1q_O mol:protein length:639 VP5: membrane-penetration protein (outer shel
6-55
GDGNSFTPTSDMT.STAAPAIDLKPGVLNPTGK...LWR...PVGTSVATIDS.LAI.V
231-283
GAFNA..ATSEVG.SLVGSSSTLSQAISTMAGKdldLIEadtPLPVSVFT.PS.LAP.R
303-344
...NSSLIRKTLTySGATYTVQLGPG...PT.......R...VIDMN.AMIDSvLTLdV
S B BGGG x HHHH ExxxEEExxxSTTSSTTGGG x EEx
HHHHSxx SS Sx HHHHHHHHHHHHHHHHHTxxxTSGxxxGG SS ExEHxHHHx
xxxSS EEEEEExETTEEEEEEE Sxxx xxxxxxxSxxx EE xSS SxEEExE
135-164
NLQRTIAARMRDVALwqkHLDTAMTMLTPD
189-215
NLCLTYPNEFYNVAI...HRYPALKPGNPD
HHHHHHHHHHHHHHHxxxHHHHHHHHHHHT
SHHHHSHHHHHHHHHxxxHH TTB SSTT
460-493
VLLRETTYK.GEVVDAIVPatvMANQTSEEVASAL
499-530
VLVSNHLNKlANVVGDAIP...VASRTDDSATSAI
SS BTxTB SEE HxxxHHHTT B HHHHH
HHHHHHHHHxHHHHHHHHSxxx STT GGGHH
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Repeats regions & their secondary structure in the PDBID : 3k1q_P

>3k1q_P mol:protein length:639 VP5: membrane-penetration protein (outer shel
6-55
GDGNSFTPTSDMT.STAAPAIDLKPGVLNPTGK...LWR...PVGTSVATIDS.LAI.V
231-283
GAFNA..ATSEVG.SLVGSSSTLSQAISTMAGKdldLIEadtPLPVSVFT.PS.LAP.R
303-344
...NSSLIRKTLTySGATYTVQLGPG...PT.......R...VIDMN.AMIDSvLTLdV
S B BGGG x HHHH ExxxEEExxxSTTSBBTGGG x EEx
HHHHSxx SS Sx HHHHHHHHHHHHHHHHHTxxxTSGxxxGG SS ExEHxHHHx
xxxSS EEEEEExETTEEEEEEE Sxxx xxxxxxxSxxx EE xSS SxEEExE
135-164
NLQRTIAARMRDVALwqkHLDTAMTMLTPD
189-215
NLCLTYPNEFYNVAI...HRYPALKPGNPD
HHHHHHHHHHHHHHHxxxHHHHHHHHHHHT
SHHHHSHHHHHHHHHxxxHH TTB SSTT
460-493
VLLRETTYK.GEVVDAIVPatvMANQTSEEVASAL
499-530
VLVSNHLNKlANVVGDAIP...VASRTDDSATSAI
SS BTxTB SEE HxxxHHHTT B HHHHH
HHHHHHHHHxHHHHHHHHSxxx STT GGGHH
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Repeats regions & their secondary structure in the PDBID : 3k1q_Q

>3k1q_Q mol:protein length:639 VP5: membrane-penetration protein (outer shel
6-55
GDGNSFTPTSDMT.STAAPAIDLKPGVLNPTGK...LWR...PVGTSVATIDS.LAI.V
231-283
GAFNA..ATSEVG.SLVGSSSTLSQAISTMAGKdldLIEadtPLPVSVFT.PS.LAP.R
303-344
...NSSLIRKTLTySGATYTVQLGPG...PT.......R...VIDMN.AMIDSvLTLdV
S B BGGG x HHHH ExxxEEExxxSTTSSTTGGG x EEx
HHHHSxx SS Sx HHHHHHHHHHHHHHHHHTxxxTSGxxxGG SS ExEHxHHHx
xxxSS EEEEEExETTEEEEEEE SxxxS xxxxxxxSxxx EE xSS SxEEExE
135-164
NLQRTIAARMRDVALwqkHLDTAMTMLTPD
189-215
NLCLTYPNEFYNVAI...HRYPALKPGNPD
HHHHHHHHHHHHHHHxxxHHHHHHHHHHHT
SHHHHSHHHHHHHHHxxxHH TTB SSTT
460-493
VLLRETTYK.GEVVDAIVPatvMANQTSEEVASAL
499-530
VLVSNHLNKlANVVGDAIP...VASRTDDSATSAI
SS BTxTB SEE HxxxHHHTT B HHHHH
HHHHHHHHHxHHHHHHHHSxxx STT GGGHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 3k1q_U

>3k1q_U mol:protein length:639 VP5: membrane-penetration protein (outer shel
6-55
GDGNSFTPTSDMT.STAAPAIDLKPGVLNPTGK...LWR...PVGTSVATIDS.LAI.V
231-283
GAFNA..ATSEVG.SLVGSSSTLSQAISTMAGKdldLIEadtPLPVSVFT.PS.LAP.R
303-344
...NSSLIRKTLTySGATYTVQLGPG...PT.......R...VIDMN.AMIDSvLTLdV
S B BGGG x HHHH ExxxEEExxxSSSSSTTGGG x EEx
HHHHSxx SS Sx HHHHHHHHHHHHHHHHHTxxxTSGxxxGG SS ExEHxHHHx
xxxSS EEEEEExETTEEEEEEE Sxxx xxxxxxxSxxx EE xSS SxEEExE
135-164
NLQRTIAARMRDVALwqkHLDTAMTMLTPD
189-215
NLCLTYPNEFYNVAI...HRYPALKPGNPD
HHHHHHHHHHHHHHHxxxHHHHHHHHHHHT
SHHHHSHHHHHHHHHxxxHH TTB SSTT
460-493
VLLRETTYK.GEVVDAIVPatvMANQTSEEVASAL
499-530
VLVSNHLNKlANVVGDAIP...VASRTDDSATSAI
SS BTxTB SEE HxxxHHHTT B HHHHH
HHHHHHHHHxHHHHHHHHSxxx STT GGGHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 3k1q_V

>3k1q_V mol:protein length:639 VP5: membrane-penetration protein (outer shel
6-55
GDGNSFTPTSDMT.STAAPAIDLKPGVLNPTGK...LWR...PVGTSVATIDS.LAI.V
231-283
GAFNA..ATSEVG.SLVGSSSTLSQAISTMAGKdldLIEadtPLPVSVFT.PS.LAP.R
303-344
...NSSLIRKTLTySGATYTVQLGPG...PT.......R...VIDMN.AMIDSvLTLdV
S B BGGG x HHHH ExxxEEExxxSTTSSTTGGG x EEx
HHHHSxx SS Sx HHHHHHHHHHHHHHHHHTxxxTTGxxxGG SS ExEHxHHHx
xxxSS EEEEEExETTEEEEEEE SxxxS xxxxxxxSxxx EE xSS SxEEExE
135-164
NLQRTIAARMRDVALwqkHLDTAMTMLTPD
189-215
NLCLTYPNEFYNVAI...HRYPALKPGNPD
HHHHHHHHHHHHHHHxxxHHHHHHHHHHHT
SHHHHSHHHHHHHHHxxxHH TTB SSTT
460-493
VLLRETTYK.GEVVDAIVPatvMANQTSEEVASAL
499-530
VLVSNHLNKlANVVGDAIP...VASRTDDSATSAI
SS BTxTB SEE HxxxHHHTT B HHHHH
HHHHHHHHHxHHHHHHHHSxxx STT GGGHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 3k1q_W

>3k1q_W mol:protein length:639 VP5: membrane-penetration protein (outer shel
6-55
GDGNSFTPTSDMT.STAAPAIDLKPGVLNPTGK...LWR...PVGTSVATIDS.LAI.V
231-283
GAFNA..ATSEVG.SLVGSSSTLSQAISTMAGKdldLIEadtPLPVSVFT.PS.LAP.R
303-344
...NSSLIRKTLTySGATYTVQLGPG...PT.......R...VIDMN.AMIDSvLTLdV
S B BGGG x HHHH ExxxEEExxxSTTSSTTGGG x EEx
HHHHSxx SS Sx HHHHHHHHHHHHHHHHHTxxxTSGxxxGG SS ExEHxHHHx
xxxSS EEEEEExETTEEEEEEE SxxxS xxxxxxxSxxx EE xSS SxEEExE
135-164
NLQRTIAARMRDVALwqkHLDTAMTMLTPD
189-215
NLCLTYPNEFYNVAI...HRYPALKPGNPD
HHHHHHHHHHHHHHHxxxHHHHHHHHHHHT
SHHHHSHHHHHHHHHxxxHH TTB SSTT
460-493
VLLRETTYK.GEVVDAIVPatvMANQTSEEVASAL
499-530
VLVSNHLNKlANVVGDAIP...VASRTDDSATSAI
SS BTxTB SEE HxxxHHHTT B HHHHH
HHHHHHHHHxHHHHHHHHSxxx STT GGGHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 3k1q_X

>3k1q_X mol:protein length:639 VP5: membrane-penetration protein (outer shel
6-55
GDGNSFTPTSDMT.STAAPAIDLKPGVLNPTGK...LWR...PVGTSVATIDS.LAI.V
231-283
GAFNA..ATSEVG.SLVGSSSTLSQAISTMAGKdldLIEadtPLPVSVFT.PS.LAP.R
303-344
...NSSLIRKTLTySGATYTVQLGPG...PT.......R...VIDMN.AMIDSvLTLdV
S B BGGG x HHHH ExxxEEExxxSTTSSTTGGG x EEx
HHHHSxx SS Sx HHHHHHHHHHHHHHHHHTxxxTSGxxxGG SS ExEHxHHHx
xxxSS EEEEEExETTEEEEEEE Sxxx xxxxxxxSxxx EE xSS SxEEExE
135-164
NLQRTIAARMRDVALwqkHLDTAMTMLTPD
189-215
NLCLTYPNEFYNVAI...HRYPALKPGNPD
HHHHHHHHHHHHHHHxxxHHHHHHHHHHHT
SHHHHSHHHHHHHHHxxxHH TTB SSTT
460-493
VLLRETTYK.GEVVDAIVPatvMANQTSEEVASAL
499-530
VLVSNHLNKlANVVGDAIP...VASRTDDSATSAI
SS BTxTB SEE HxxxHHHTT B HHHHH
HHHHHHHHHxHHHHHHHHSxxx STT GGGHH
PDB View PDBsum View Pfam View