A Simple Perl CGI

Repeats regions & their secondary structure in the PDBID : 3u4q_A

>3u4q_A mol:protein length:1232 ATP-dependent helicase/nuclease subunit A

MNIPKPADSTWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQRPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDEVLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKSAIEELPFYQYVKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESGEGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRSDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARGLSEQEDVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYLDFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEAIRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKELLTEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQGIIDCLYETEDGLYLLAYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTKVKGCALYFFDGGHILTL

605-637	QGIPVYANLTSGYFEAVEVAVALSVLKVIDNPY
638-670	QDIPLASVLRSPIVGADENELSLIRLENKKAPY
	SSS EEE S TTSHHHHHHHHHHHHHH S
	HHHHHHHHHSTTT HHHHHHHHTT SSS H
1162-1188	YETEDGLYLLAYK...SDRIEGKFQHGFEG
1197-1226	YETQIQLYTKAVEqiaKTKVKGCALYFFDG
	EE SS EEEEEEExxx TT
	SHHHHHHHHHHHHxxxHHHSS EEEEEEEE
1079-1101	IEEAEQTVHRLYEKELLTEEQKD
1105-1127	IEEIVQFFHTEIGGQLIGAKWKD
	HHHHHHHHHHHHHTTSS HHHHH
	HHHHHGGGGSHHHHHHHS SEEE
846-859	LPLIAMKKKMRREL
878-891	LFLIGSCKDHQKQL
	HHHHHHHHHHHHHH
	EEEEEE S HHHHH
125-163	..DLDP......GFRIADQTE..GELIGDEVLDELFEDEYAKGEKAFFE..
172-216	RHDLDL......QFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKSAIEEL
223-267	KEDIAMvlngakEKLLRAL.ELTKAPGGPAPRADNF..LDDLAQ...IDEL
	xxT TxxxxxxT EE HHHxxHHHHHHHHHHHHHHHHHHHT HHHHHxx
	S HHHxxxxxxHHHHHHHHHHHTTSSSHHHHHHTTHHHH TT TTTS
	HHHHHHxxxxxxHHHHHHHxHHHHHHHH xx HHxxxHHHH

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Repeats regions & their secondary structure in the PDBID : 3u4q_B

>3u4q_B mol:protein length:1166 ATP-dependent helicase/deoxyribonuclease subu

MGAEFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSRPFLTSTGVQMLLRKLIEEHKQEFKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESGTASEYRGERVLSEKLHDLSILYQQMEKSLADQYLHSEDYLTLLAEHIPLAEDIKGAHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTYYRLHQKAKELNLDITYKELSGTERHTKTPELAHLEAQYEARPAIPYAEKQEALTVMQAANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVREQVDQLENYCIAYGIKGDRWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDLFQQMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDRLYVSYPIADAEGKTLLPSMIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQSFTASQLRLWTREYDISDVWWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETFNACPFSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLRDEKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVAYKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHIHDPMIQSNLPLGLDEIEQEIFKKFKMKGLLLGDQEVVRLMDTTLQEGRSNIINAGLKKDGSLRSDSAAVGEKEFDLLTKHVRRTFQEAGEQITDGRVSIEPYKMKNKTPCTYCAFKSVCQFDESLEENEYRPLKAEKDKTILEWIKKEADGNEHS

105-198	QEFKVYQKASDKSgftAQVERMLTEFK.RYCLEPEDIRRMAESGtASEYRgervLSEKLHDLSILYQQMEKSLADQYLHSEDYLTLLAEH.....IPLAE
216-307	QEFRVLEQLMVHA...EHITFSLTADKpSYEREPHELELFRMTG.KTYYR....LHQKAKELNLDITYKELSGTERHTKTPELAHLEAQYearpaIPYAE
	GG SSTTTTSSSTxxxHHHHHHHHHHHxHHHHTT HHHHHHHHxTTSTTxxxxS TTHHHHHHHHHHHHHHHHHHHHHSTTT EEGGGxxxxxHHHHH
	HHHHHHHHHHHH xxxSEEEEEEE SSx SSS TT TTHHHxHHHHHxxxxHHHHHHHHTT EEEEEE S STTTT HHHHHHHHSxxxxxSS SS
585-615	LDQVFVGNMDLS....RMYgtsCTFVLGANDG..VLP
648-681	LDEHFLIYMAFSspsdRLY...VSYPIADAEGktLLP
	SS EEEEESSS xxxx SxxxS SEEEEE xxBTT
	HHHHHHHHHHHTxxxxS SxxxSEEEEEEESSxx SS
703-743	EPEQV..SDEEQL...........MYVVNKSVAQSFTASQLRLWTREY......DISDVW
771-830	EVKQLerSVSRQLygeriqgsvsrMETFNACPFSHFASHGLHLKERQFfkleapDIGQLF
	GGGSxx HHHHTxxxxxxxxxxxTSTTSHHHHHHHHHHHHHHHHTT xxxxxx THH
	xx HHHHHxxxxxxxxxxxHHT SSB BHHHHHHHHH HHHHxxxxxxHHHTTS
622-644	GVLSDDDR.EWLKTIGVELSSGGR
898-921	GILSEHAKaSGFVPIGLELGFGGK
	SSS HHHHxHHHHHHT SS
	HHHHHHHTxT EEEEEEEEESS

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