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Repeats regions & their secondary structure in the PDBID : 4f5x_W

>4f5x_W mol:protein length:1089 RNA-directed RNA polymerase
674-757
GI.EI.AKRYIaGGKIFFRAGINLLnnekrgQSTQWDQAAILYSNYivnRLRGFET.DREFILTKIMQMTSVAITGSLRLFPSERVL
966-1042
GIpKIdADTYV.GSKIYSRDKYRIL......ESYVYNLLSINYGCY...QLFDFNSpDLEKLIRIPFKGKIPAVTFILHLYAKLEVI
Bx xSS EExETTEEE SxxxxxxSS SS S HHHHHxxxHHHHHHHxHHHHHHS HHHHHHHHHHHH EEEETT
x x x HHHxxxxxxHHHHHHHHHTTTTSTxxxTGGGS TxT S B HHHHHHHH
188-238
KYRYEYDVmKDKPY..YLVTWANSSIEMLMSVFSHDDYLI.AKELI.VLSYSNRS
348-401
KTEYTENV.DDEMYreYTMLIRDEVVKMLEEPVKHDDHLLrDSELAgLLSMSSAS
TS HHHxHTTSBxxTTHHHHHHHHHHHHTT SHHHHHxHHHHHxHHHHTT
x xx HHHHHTT HxHHHTHxHHHHHHHG
50-83
......................................................KNGLSLRKLFVEYNDVIEN....ATLLSILS.YSYDKYN
86-165
ERKLVkYAKGKPLEADL..TVNE.LDY.ENNKMTSElfPTAEEYTD.SLMDPAILTSLSSNLNAVMFW..LEKHEND..VAEKLKVYKR....
478-567
EKMLI.YAKHTREYAEFysQSNQlLSYgDVTRFLSN..NTMVLYTDvSQWDSSQHNTQPFRKGIIMGLDILANMTNDAKVLQTLNLYKQTQIN
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTT HHHHHTTHHHHHHxxxxSEEEEEEExE S S
HHHHGxGGTTS xxSS xSSGxGGS BHHxxHH SSGGGx GGGT SSS HHHHHHHHxxHHHHHHTxxSS HHHHHHxxxx
HHHHHxHHHT TTBTTTxxSTT x HHxHHHHH xx xEE TTTGGG HHHHHHHHHHHHHH HHHHHHHHH
844-858
PISLEKRRAQISALL
864-878
PVTFKSSKITINDIL
HHHHHHHHHHHHHHH
B HHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_O

>4f5x_O mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
EE xxSS EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EEE SSS xx EEE
TSSGGG TT SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_N

>4f5x_N mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
EE xxSS EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EE BTTB xx EE
TSSGGG S SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_M

>4f5x_M mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
ExxESB EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EE BTTB xx EE
TSSGGGTT SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_C

>4f5x_C mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
EEExxESB EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EEE SSS xx EEE
TSSGGG TT SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_D

>4f5x_D mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
EEExxES EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EE BTTB xx EE
TSSGGG TT SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_E

>4f5x_E mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
ExxESB EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HSS EE BTTB xx EE
TSSGGGGGG SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_F

>4f5x_F mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
EEExxES EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EE SSS xx EE
TSSGGG TT SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_G

>4f5x_G mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
EEExxES EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EEE SSS xx EEE
TSSGGG TT SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_H

>4f5x_H mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
EEExxES EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EEE BTTB xx EEE
TSSGGG TT SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_I

>4f5x_I mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
EEExxES EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EEE SSS xx EEE
TSSGGG S SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_J

>4f5x_J mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
EEExxES EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EE BTTB xx EE
TSSGGG TT SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_K

>4f5x_K mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
ExxES EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EE BTTB xx EE
TSSGGG TT SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_L

>4f5x_L mol:protein length:397 Intermediate capsid protein VP6
150-228
FTFhkPNIFPYSASFTLNRSQPA..HDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEhiVQLRR..VLTTATITLLPD
232-310
FSF..PRVINSADGATTWYFNPVilRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLS..FQLMRppNMTPAVAALFPN
EEExxES EEEEEEEEEEE xxTT SS EEEEEEEEETEEEEEEEETTTTTTSGGGEEExxEEEEExxEEEEEEEEEEEE
GSSxx EEEE TTSS EEEE EExxE EEEEEEEEETTEEEEEEES EEEEEEEEEEEExxEEEEExxE SS HHHHT
41-62
MNGNEFQTGGIGNLP..IRNWNFD
119-142
LSGLKFKRINFDNSSeyIENWNLQ
HTT EEEEETTTEExxEEEE
TSSGGG TT SxxHHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4f5x_A

>4f5x_A mol:protein length:880 VP2 protein
647-669
KRLHIFDVARVPDDQMYRLRDRL
677-699
RRLDIFNLILMNMDQIERASDKI
HTSTT GGGS STTHHHHHHHH
HHHHHHHHHHHHHHHHHHSSSS
40-72
VLSKKEEvvtdSQEEIKIadEVKKSTKEESKQL
75-101
VLKTKEE....HQKEIQY..EILQKTIPTFEPK
104-129
ILKKLED....IKPE.QA..KKQTKLFRIFEPR
xxxx xx
xxxx xx
HHHHHHTxxxx x xx S EEEE
792-809
VDTLKPILYKINSDSNDF
818-835
VPTSTTKVYKQVPQQFDF
S B TTTSS
BS EE B H
138-156
GEKELRNrWYWKLKKDTL...P
158-178
GDYDVRE.YFLNLYDQVLtemP
TEE SS x EEEES xxx
SHHHHHHxHHHHHHHHHHxxxH
720-735
YVNIARNLDGFQQINL
744-759
YAQITNMLLNNQPVAL
S SB SS SS BS
SHHHHHHHHT EE
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Repeats regions & their secondary structure in the PDBID : 4f5x_B

>4f5x_B mol:protein length:880 VP2 protein
647-669
KRLHIFDVARVPDDQMYRLRDRL
677-699
RRLDIFNLILMNMDQIERASDKI
HHT S TTSS HHHHHHHHHHH
HHHHHHHHHHHHHHHHHHT SS
40-72
VLSKKEEvvtdSQEEIKIadEVKKSTKEESKQL
75-101
VLKTKEE....HQKEIQY..EILQKTIPTFEPK
104-129
ILKKLED....IKPE.QA..KKQTKLFRIFEPR
xxxx xx
TSSSTTSxxxxSHHHHHHxxHHHHTTS SSS
HHHHHHTxxxx x xx S SEEEE
792-809
VDTLKPILYKINSDSNDF
818-835
VPTSTTKVYKQVPQQFDF
S EE B SSS S
B SEEE B S
138-156
GEKELRNrWYWKLKKDTL...P
158-178
GDYDVRE.YFLNLYDQVLtemP
SB S x EEEEESS xxx
SHHHHHHxHHHHHHHHHHxxxH
720-735
YVNIARNLDGFQQINL
744-759
YAQITNMLLNNQPVAL
EE S SS EEEH
SHHHHHHHTT EEE
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