A Simple Perl CGI
HOME

Repeats regions & their secondary structure in the PDBID : 4gzz_D

>4gzz_D mol:protein length:1534 DNA-directed RNA polymerase subunit beta'
2-194
..........................KK.E..VRKVRIAL.ASPEKIRSWSYGEV..EKPETINY.RTlkpERDGLF................D..ErifgPIKDYECACGkYKRQRFEGKVCERcGVEVTKS.....IVRRYRMGHIELATPAAHIW...FVK.DV..PS..KIGTLLDLSATEL..EQVLYFS......KYI.VLDPKGAILngvpVEKRQLLTDEEYrelrygKQETYPLPPGVD.ALVKDGEEVVKGQELA.PG
195-424
VVSRLDGVAL.YRFPRRV...RVEYVKK.E..RAGLRLPL.AAWVEKEAYKPGEILAELPEPYLF.RA...EEEGVVELKELEEGAFLVLRRED..E....PVATYFLPVG.MTPLVVHGEIVEK.GQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTE..PKDYRVQPHMNVVVPEG..ARVEAGD......KIVAAIDPEEEVI....AEAEGVVHLHEPasilvvKARVYPFEDDVE...VSTGDRVAPGDVLA.DG
427-595
VKSDVYG.........RV...EVDLVRNvV..RVVESYDI.DARMGAEAIQ..QLLKELDLEAL.......EKELLEEMKHPSRARRAKARKRL..E.....VVRAFLDSG.NRP...........................................EWMILEAVPvlPPDLR..PMVQV...DG..GRFATSDlndlyrRLINRNNRLKKLL......AQGA.....P..eiiiRNEKRMLQEAVD.ALLDNGR...RGAPVTnPG
603-794
LTDILSG.KQ.GRFRQNLlgkRVDYSGR.SviVVGPQLKL......HQCGLPKRMALELFKPFLLkKM...EEKGIA..PNVKAARRMLERQRDikD....EVWDAL.......EEVIHGKVVL.....LNRAPTLHRL..GIQAFQ.PVLVEGQSIQLHPLVCEAF..NADFD.GDQMAVHVPLSsfAQAEARI......QMLSA....HNLL....SPASG.........................ePLAKPSRDIILGLYYI.TQ
795-882
VRKEKKGAGLeFATPEEA...LAAHERG.E..VA.LNAPIkVAGRETSVGRLKYVFAN.PDEALL..A...VAHGIVDLQDVVTVRYMGKRLET..S....PGRILF.................................................................................................................................................................
xxxxxxxxxxxxxxxxxxxxxxxxxx x xx EEEEEEx HHHHHHSEEEE xx S B SxSSxxx SB SSxxxxxxxxxxxxxxxxSxxSxxxxS TTTS SSxSS SSSS SSTxTTT SxxxxxSS SHHHHHH EEEEExxxEEExEExxE xxHHHHSSSS TTTTxxTTTS TTxxxxxxHHHxHHHHTS xxxxB S SSSxxxxxx SS HHHxHHHHHSTT B TxT
B SS SEEEx SB xxx B x xx x x xxx xx xxxx x x Bxx TTS TTxxEEE TTSxxxxxx SS SS SS xxxx SSEEE B xxxxxxSB EEESEEEEExxx SS B S SS xTT
EE SS Sxxxxxxxxx ExxxEEETTTTxExxEEEE x B SHHHHxxHHHHHT HHHxxxxxxxHHHHHHHHTTSS HHHHHHHHHHxxHxxxxxHHHHHHHTTxT xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGGGEEEEExxEE SxxTTS xxxEExx STT EExxxxxx THHHHHHHHHHxxxxxxHHHHxxxxxHxxxxxxHHHHHS HHHxHHHHHHHxxxHHHHHHxHH
TTTTTSSxTTxSSSSHHHxxxH B SSxExxEEEEEEE xxxxxxTTS TTEEEEEHHHHHHHTxHHxxxHHHHHHxxHHTTT SSHHHHHHHxxTxxxxSSTT xxxxxxx HHHHHHHHHxxxxxHHTT EEEExx SS SxGGGEEEEEEEEESSSSEEExx SGGGxTTTT TTT ExxEEEE xxxxxxSHHHHxxxxHHHHxxxxHHSBGxxxxxxxxxxxxxxxxxxxxxxxxxxGG B SSSSSBTT x H
S x SS SSxxxTTTHHHHxHxxHHxHTSS xTT SSS HHHHH B xSSHHHHxxHxxxHHHTTTSS TTS EEEEETTEEExxExxxxE HHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
1386-1398
DSRLL.EGQVLEKW
1404-1417
NERLIaEGKTPVAW
SS SSx EEEHHHH
HHHHTx
1246-1270
VAGAADITQGLPRVIELFEARRPKA
1319-1343
VEAGQPLTRGAIDPHQLLEAKGPEA
HHHHHHHHTT SS
SS SS SB HHHHHHHT HHH
891-933
EDEKVAWE.....LIQLDVPQEKNSLKD.LVYQAFLRLGMEKTARLLDA
958-1006
EEKKQYLEeadrkLLQIEQAYEMGFLTDrERYDQILQLWTETTEKVTQA
S HHHHHHxxxxxHS SSS HHHHHHxHHHHHHHHH HHHHHHHHHH
TTHHHHHHxxxxxHHHHHHHHHHHHHHHxT S HHHHHHHHHHHHHHHH
1149-1163
LA.REVEVLGVRLEEG
1166-1181
LSmDDVHLLIKAAEAG
SxS EE SSSEE TT
xHHHHHHHHHHHHH
935-950
KYYGFTFSTTSGITIG
1203-1218
KCYGYDLSMARPVSIG
HHHHHHHHHHH
HHH S SSSSS TT
1097-1125
KLVDVTHEIVVREadcgTTNYISVPlfQP
1362-1384
KLHDKHIEIVVRQ....MMKYVEVT..DP
HHHTTTTT B xxxxS S xxEE
HHHHHHHHHHxxxxTTSEEEESxxS
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4gzz_C

>4gzz_C mol:protein length:1119 DNA-directed RNA polymerase subunit beta
36-76
......PEKRENVgIQAA...FRE.TFPIEEED....KGKG.GLVLDFLE.YRLGEP.......................................................................................
761-884
FKGESEPTPEERL.LRSI...FGEKARDVKDTSlrvpPGEG.GIVVRTVR.LRRGDPGVELKPGvrevvRVYVAQKRKLQVGDKLANRHGNKG.......VVAKIL......PVEDMPHLPDGTPVDVIL.NPLGVPSRMNlGQ
906-1030
FDGAKEPEIKELL.AQAFevyFGKR............KGEGfGVDKREVEvLRRAEKLGLVTPG.....KTPEEQLKELFLQGKVVLYDGRTGepiegpiVVGQMFimklyhMVEDKMHARSTGPYSLITqQPLGGKAQFG.GQ
xxxxxxTTSS TxTHHHxxxHHHxHSSS xxxx x EEEE x B xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
x xxx B xxxxEE xSS EEEExEEEEE SS SS xxxxx TTEEEEEEEEEEE B TT ExxxxxxxEE SS xxxxxx EEEEEEE STTS B SxSS B SEEE xGG
SSS HHHHHHHHxHHHHxxxHHHHxxxxxxxxxxxxHHHHxHHT HxHHHHHHHHHHHHTxxxxxSS TTS HHHHHHHHHHTTEE Bxxxxxxx SSS xxxxxxB SS EEEEEEEEEEBTTx STTS EEESxS
630-641
RSNQGTALDQRP
648-659
RVRKGDLLADGP
E SSS EE EE
EE TT BSEE T
304-348
....................................................LPTLRYLFALTAGVP........GHEVDDI..DHLGNRRIRTV..GELMTDQFRVGL
349-451
ARLARGVRermlmgsedsltpaklvnsrpleaaireffsrsqlsqfkdetnpLSSLRHKRRISALGPggltreraGFDVRDVhrTHYG..RICPVetPE....GANIGL
453-482
TSLAAYAR......................................................................VDEL..GFIRTPYRRVV..GGVVTDE.....
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHTSS SxxxxxxxxS TxxT STTEEEE HxxHHHHHHHHHHHH
HHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHGGGG SS IIIIxxxxxxxxI SSHHxxHHHHxxHHHHHxxH xxxxTTEEE
EEB SS ExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxE SSxxS EEEEEEEEExxTTEEEEExxxxx
170-246
PWIDLEVEPNGVVSMKVNKRKFplVLLLRVLGYDQETLARELGAYgELVQGLMDESVFAMR..PEEALIRLFTLLRPGD
678-753
PFDGYNFEDAIVISEELLKRDF..YTSIHIERYEIEARDTKLGPE.RITRDIPHLSEAALRdlDEEGVVRIGAEVKPGD
EEEEE TTS EEEESSS EExxEHHHHHHHTT HHHHHHHHHxTS GGGHHHH TTTxxS STHHHHHHHHHHS
TTTTSTT EEEETHHHHTT xxSB EEEEE EEE SSS xEE S TTS SGGGSxxS SSSB TT EE T
5-16
RFGR.IREVIPLP
154-166
RPGRyIASIIPLP
E xS SS
SSSxEEEEE S
484-528
VYMTATEED..RYTIAQANTPLEGNriaaervVARRKGEPVIVSPEE
578-617
VVMTGLEERvvRDSLAALYAEEDGE.......VAKVDGNRIVVRYED
EEE HHHHTxxTS EE TTS EETTxxxxxxxEE SSEEEESSSSE
SEE S HHHxxHHHHTT S B SSSxxxxxxxEEEEEE SSEEEEEE
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4gzz_B

>4gzz_B mol:protein length:315 DNA-directed RNA polymerase subunit alpha
87-99
VRFLNPSLQTVTL
120-132
VEIMNPDLHIATL
EEESSTT SEEEE
EEES EEEEB
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4gzz_A

>4gzz_A mol:protein length:315 DNA-directed RNA polymerase subunit alpha
87-99
VRFLNPSLQTVTL
120-132
VEIMNPDLHIATL
EE SSTT SEEEE
BEES S EEEEB
PDB View PDBsum View Pfam View