A Simple Perl CGI
HOME

Repeats regions & their secondary structure in the PDBID : 4jk1_X

>4jk1_X mol:protein length:613 Escherichia coli RNA polymerase sigma70 subun
246-266
QEE.ILKLseVFKQFRLVPKQF
283-302
QERlIMKL..CVEQCKMPKKNF
HHHxHHHHxxHHHHTT HH
HHHxHHHHxxHHHTTTT HHH
195-233
DEDEEDGDddsADDDNSIDPELAREKFAELRAqyvVTRD
514-546
DEDSHLGD...FIEDTTLELPLDSATTESLRA...ATHD
xxx HHHHHHHHHHxxxHHHH
SSS GGGxxxT EE SS HHHHHHHHHHHHxxxHHHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4jk1_Y

>4jk1_Y mol:protein length:613 Escherichia coli RNA polymerase sigma70 subun
246-266
QEE.ILKLseVFKQFRLVPKQF
283-302
QERlIMKL..CVEQCKMPKKNF
HHHxHHHHxxHHHHTT HH
HHHxHHHHxxHHHTTTT HHH
195-233
DEDEEDGDddsADDDNSIDPELAREKFAELRAqyvVTRD
514-546
DEDSHLGD...FIEDTTLELPLDSATTESLRA...ATHD
xxx HHHHHHHHHHxxxHHHH
SSS HHHxxxH EE SS HHHHHHHHHHHHxxxHHHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4jk1_D

>4jk1_D mol:protein length:1407 Escherichia coli RNA polymerase beta' subunit
982-1040
.................LKLIDEFGRTK..ESY...........................KVPYGAVLAKGDGEQVAGGETVANwdpHTMP..VITEVSGFVRFTDM
1042-1116
DGQTITRqtdeltglssLVVLDSAERTAggKDL...........................RPALKIVDAQGNDVLIPGTDMPAQ...YFLPgkAIVQLEDGVQIS..
1117-1189
SGDTLAR..........................ipqesggtkditgglprvadlfearrpKEP..AILAEISGIVSFGKETKGK...RRL...VITPVDGSDPYEEM
xxxxxxxxxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xx
xxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xx xx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx SHHHHHHHHxxxHT xxx SS B SS B
53-87
RDGLFCARIFGpvkdyecLCGK.YKRLKHRGVICEK
883-911
RSVVSCDTDFG.......VCAHcYGRDLARGHIINK
SSSTT TTTT xxxxxxx SSSxS SSSS SGGG
SSS SSSxxxxxxxB HHxHH SSSSS
11-27
QTKTEEFDAIKIALASP
94-110
QTKVRRERMGHIELASP
SS S EEEEE H
SGGGGT EEEEEEE
497-548
...................................................................EP.IIVPSQD.VVLGLYY.MTRDCVNAKGEGMVLtgPKEAERLYRSGLASLhARV
549-664
KVRITEYEKDANGELVAKTSLKDTTVGRAILWM.IVPKGLPYSIVNQALGKKAISKMLNtcyRILGLKPTVIFADQI.MYTGFAY.AARSGASVGIDDMVI..PEKKHEIISEAEAEV.AEI
1284-1395
RVKIANRELEANGKVGATYSRDLLGITKASLATeSFISAASFQETTRVLTEAAVAGKRD...ELRGLKENVIVGRLIpAGTGYAYhQDRMRRRAAGEAPAA..PQVTAE...DASASL.AE.
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSBxSS HHxHHHHHHHxT SSS xx TTHHHHHHHT SS xSS
EEEEEEEE SS S EEEEEEEEEEHHHHHHTTxTS SSS SHHHHS SSSHHHHHHHxxxHHHHHT SHHHHHHHxHHHHHHHxHHHHHHHT GGGxxS TTHHHHHHHHHxHHH
HHHHTTTTTTT GGGS B HHHHHH xS HHHHHHHS HHHHHHHHHHTT ExxxE SSHHHHTT x SSTTSSxHHHHHHHHHTT xx xxx x x
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4jk1_I

>4jk1_I mol:protein length:1407 Escherichia coli RNA polymerase beta' subunit
982-1040
.................LKLIDEFGRTK..ESY...........................KVPYGAVLAKGDGEQVAGGETVANwdpHTMP..VITEVSGFVRFTDM
1042-1116
DGQTITRqtdeltglssLVVLDSAERTAggKDL...........................RPALKIVDAQGNDVLIPGTDMPAQ...YFLPgkAIVQLEDGVQIS..
1117-1189
SGDTLAR..........................ipqesggtkditgglprvadlfearrpKEP..AILAEISGIVSFGKETKGK...RRL...VITPVDGSDPYEEM
xxxxxxxxxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xx
xxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xx xx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx SHHHHHHHHxxxHT xxx SS B SS B
53-87
RDGLFCARIFGpvkdyecLCGK.YKRLKHRGVICEK
883-911
RSVVSCDTDFG.......VCAHcYGRDLARGHIINK
SSSTT TTTT xxxxxxx SSSxS SSSS SGGG
SSS SSSxxxxxxxB HHxHH SSSSS
11-27
QTKTEEFDAIKIALASP
94-110
QTKVRRERMGHIELASP
SS SEEEEEE H
SGGGGT EEEEEEE
497-548
...................................................................EP.IIVPSQD.VVLGLYY.MTRDCVNAKGEGMVLtgPKEAERLYRSGLASLhARV
549-664
KVRITEYEKDANGELVAKTSLKDTTVGRAILWM.IVPKGLPYSIVNQALGKKAISKMLNtcyRILGLKPTVIFADQI.MYTGFAY.AARSGASVGIDDMVI..PEKKHEIISEAEAEV.AEI
1284-1395
RVKIANRELEANGKVGATYSRDLLGITKASLATeSFISAASFQETTRVLTEAAVAGKRD...ELRGLKENVIVGRLIpAGTGYAYhQDRMRRRAAGEAPAA..PQVTAE...DASASL.AE.
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSBxSS HHxHHHHHHHxT SS Bxx TTHHHHHHHT SS xSS
EEEEEEEE SS S EEEEEEEEEEHHHHHHTTxTS S S SHHHHS SSSHHHHHHHxxxHHHHHT HHHHHHHHxHHHHHHHxHHHHHHHT GGGxxS TTHHHHHHHHHxHHH
HHHHTTTTTTT GGGS B HHHHHH xS HHHHHHHS HHHHHHHHHHTT ExxxE S TTHHHHTT x SSTTSSxHHHHHHHHHTT xx xxx x x
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4jk1_C

>4jk1_C mol:protein length:1342 Escherichia coli RNA polymerase beta subunit
877-965
VTGGDILVGKVTPKG.eTQLTPEEKLlraifgekasdvkdsslrvPNGVSGTVIDVqVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
1060-1129
IQPGDKMAGRHGNKGviSKINPIEDM...................PYDENGTPVDI.VLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
EETT EEE B B xx HHHHxxxxxxxxxxxxxxxxxxxHHHHHH xSB EE TT EEEEEEEEEE TTS HH
TT BEE SSS xxEEE GGxxxxxxxxxxxxxxxxxxxGS B SSS xSEEE TTHHHHTTBTHHHHHHHHHHHHHHHHHH
86-160
QIRGVTYSAPLRVKLRLVIYEREAPE....GTVKDIKEQEVyMGEIPLMTDNGTFVinGTervivSQLHRspgvFFDSD
452-518
RIRSVGEMAENQFRVGLVRVERAVKErlslGDLDTLMPQDM.INAKPISAAVKEFF..GS.....SQLSQ....FMDQN
TTTT EEEEEE B SSSSSxxxxS ExEEEE TTS xx BxxxxxTTB xxxxEE EE
B SHHHHHHHHHHHHHHHHHHHHHxxxxHHHH SS x TTTS SHHHHHHHxxHHxxxxxHHSSSxxxxTTEE
176-214
IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIlRALN
241-278
LVPERLRGETASFDIEANGKVYVEKGRRITARHI.RQLE
EE SSS EEEEE TT EEEEESS S EETTHHxHHHT
GGGGTTEE S EE SS EEE TTSEE HHHHxHHHH
288-315
PVEYiaGKVVAkDYIDESTGELICAANM
776-800
PVER..GDVLA.DGPSTDLGELALGQNM
STTxxGGGSExE S B TTT B
EE SxxSSEEExE TTEETTEE SSEEE
560-685
PIETP..EGPNIGLINSLSvyaqtnEYGFLETPYR.KVTDGvVTDEiHYLSAIEEGNYVIAQANSNLDEEGHF....VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL..EHDDAN.RALMGANM
1181-1308
PIATPvfDGAKEAEIKELL......KLGDLPTSGQiRLYDG.RTGE.QFERPVTVGYMYMLKLNHLVDDKMHArstgSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLtvKSDDVNgRTKMYKNI
SSS xxSGGGTTTEEEB xxxxxxSS EE TTS xEEEEExEEE xSSSEEEEEEEE HHHHHHS EE TTSxxxx SSSS SSSS EEBTTB TTT EE S TTSSS HxxHHHT TxTGGGB HH
EE xxSSS TTHHHHxxxxxxHHTTTT TTxSEE xB SSxS B SS EEEEEEEEEE SS TTTSxxxxEEEESS EEESSS EE SSSS EE HHHHHHHHHHT HxxHHHHHHxHTTTTT H
325-356
LSQSGHK.RIETLFTNDLDHGPYISETLRVDPT
521-553
LSEITHKrRISALGPGGLTRERAGFEVRDVHPT
HHHHT Sx EEEE SSSS HHHHHHHT
HHHHHHHxTEEESBSTTSB SSS STTTS T
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4jk1_H

>4jk1_H mol:protein length:1342 Escherichia coli RNA polymerase beta subunit
877-965
VTGGDILVGKVTPKG.eTQLTPEEKLlraifgekasdvkdsslrvPNGVSGTVIDVqVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
1060-1129
IQPGDKMAGRHGNKGviSKINPIEDM...................PYDENGTPVDI.VLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
EETT EEE B B xx HHHHxxxxxxxxxxxxxxxxxxxHHHHHH xSB EE TT EEEEEEEEEE TTS HH
TT BEE SSS xxEEE GGxxxxxxxxxxxxxxxxxxxGS B SSS xSEEE TTHHHHTT THHHHHHHHHHHHHHHHHH
86-160
QIRGVTYSAPLRVKLRLVIYEREAPE....GTVKDIKEQEVyMGEIPLMTDNGTFVinGTervivSQLHRspgvFFDSD
452-518
RIRSVGEMAENQFRVGLVRVERAVKErlslGDLDTLMPQDM.INAKPISAAVKEFF..GS.....SQLSQ....FMDQN
TTTT EEEE B SSSSSxxxxS ExEEEE TTS xx BxxxxxTTB xxxxEE EE
B SHHHHHHHHHHHHHHHHHHHHHxxxxHHHH S x TTTS SHHHHHHHxxHHxxxxxHHTTSxxxxTTEE
176-214
IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIlRALN
241-278
LVPERLRGETASFDIEANGKVYVEKGRRITARHI.RQLE
EE SSS EEEEE TT EEEEESS S EETTHHxHHHT
GGGGTT B S EE SS EEE TTSB HHHHxHHHH
288-315
PVEYiaGKVVAkDYIDESTGELICAANM
776-800
PVER..GDVLA.DGPSTDLGELALGQNM
STTxxGGGSBxB S B TTT B
EE SxxS EEExE TTEETTEE SSEEE
560-685
PIETP..EGPNIGLINSLSvyaqtnEYGFLETPYR.KVTDGvVTDEiHYLSAIEEGNYVIAQANSNLDEEGHF....VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL..EHDDAN.RALMGANM
1181-1308
PIATPvfDGAKEAEIKELL......KLGDLPTSGQiRLYDG.RTGE.QFERPVTVGYMYMLKLNHLVDDKMHArstgSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLtvKSDDVNgRTKMYKNI
SSS xxSGGGTTTEEEB xxxxxxSS EE TTSSxEEEEExEEE xSSSEEEEEEEE HHHHHHSEEE TTSxxxx SSSS SSSS EEETTB TTT EE S TTSSS HxxHHHT TxTGGGS HH
EE xxSSS TTHHHHxxxxxxHHTTTT TTxSEE xB SSxS B SS EEEEEEEEEEBS TTTSxxxxEEEESS EEESSS EE SSSS HHHHHHHHHHT HxxHHHHHHxHTTTTT H
325-356
LSQSGHK.RIETLFTNDLDHGPYISETLRVDPT
521-553
LSEITHKrRISALGPGGLTRERAGFEVRDVHPT
HHHHT Sx EEEE SSS HHHHHHHT
HHHHHHHxTEEESBSSSSB SSS STTTS G
PDB View PDBsum View Pfam View