A Simple Perl CGI
HOME

Repeats regions & their secondary structure in the PDBID : 4lk1_F

>4lk1_F mol:protein length:613 RNA polymerase sigma factor RpoD
246-266
QEE.ILKLseVFKQFRLVPKQF
283-302
QERlIMKL..CVEQCKMPKKNF
HHHxHHHHxxHHHHHTEEE HH
HHHxHHHHxxIIIIIS STT
195-233
DEDEEDGDddsADDDNSIDPELAREKFAELRAqyvVTRD
514-546
DEDSHLGD...FIEDTTLELPLDSATTESLRA...ATHD
xxx HHHHHHHHHHxxxHHHH
SSS BGGGxxxG B SSS HHHHHHHHHHHHxxxHHHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4lk1_L

>4lk1_L mol:protein length:613 RNA polymerase sigma factor RpoD
246-266
QEE.ILKLseVFKQFRLVPKQF
283-302
QERlIMKL..CVEQCKMPKKNF
HHHxHHHHxxHHHHHTEEE HH
HHHxHHHHxxIIIIIS STT
195-233
DEDEEDGDddsADDDNSIDPELAREKFAELRAqyvVTRD
514-546
DEDSHLGD...FIEDTTLELPLDSATTESLRA...ATHD
xxx HHHHHHHHHHxxxHHHH
SSS BGGGxxxG B SSS HHHHHHHHHHHHxxxHHHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4lk1_D

>4lk1_D mol:protein length:1407 DNA-directed RNA polymerase subunit beta'
982-1040
.................LKLIDEFGRTK..ESY...........................KVPYGAVLAKGDGEQVAGGETVANwdpHTMP..VITEVSGFVRFTDM
1042-1116
DGQTITRqtdeltglssLVVLDSAERTAggKDL...........................RPALKIVDAQGNDVLIPGTDMPAQ...YFLPgkAIVQLEDGVQIS..
1117-1189
SGDTLAR..........................ipqesggtkditgglprvadlfearrpKEP..AILAEISGIVSFGKETKGK...RRL...VITPVDGSDPYEEM
xxxxxxxxxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xx
xxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xx xx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx SHHHHHHHHxxxTT xxx SS B SSSSE
53-87
RDGLFCARIFGpvkdyecLCGK.YKRLKHRGVICEK
883-911
RSVVSCDTDFG.......VCAHcYGRDLARGHIINK
SSBSS TTTT xxxxxxx SBTxTB SSSS SSS
TTT TTSxxxxxxxB HHxHH SSSSS
11-27
QTKTEEFDAIKIALASP
94-110
QTKVRRERMGHIELASP
S SEEEEE H
GGGGTT EEEEEEEEE
497-548
...................................................................EP.IIVPSQD.VVLGLYY.MTRDCVNAKGEGMVLtgPKEAERLYRSGLASLhARV
549-664
KVRITEYEKDANGELVAKTSLKDTTVGRAILWM.IVPKGLPYSIVNQALGKKAISKMLNtcyRILGLKPTVIFADQI.MYTGFAY.AARSGASVGIDDMVI..PEKKHEIISEAEAEV.AEI
1284-1395
RVKIANRELEANGKVGATYSRDLLGITKASLATeSFISAASFQETTRVLTEAAVAGKRD...ELRGLKENVIVGRLIpAGTGYAYhQDRMRRRAAGEAPAA..PQVTAE...DASASL.AE.
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSBxS SHxHHHHHHHxHS SS TTTT EExxSSHHHHHHHHHTTSSx SS
EEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHTxTS TTS GGGGSS HHHHHHHHHxxxHHHHHH HHHHHHHHxHHHHHHHxHHHHHHTT GGGxxS TTHHHHHHHHHxHHH
HHHHHTTSSSSSSS B HHHHTT xS HHHHHHHS HHHHHHHHHHHT ExxxE SHHHHHHTTS x SSGGGHxHHHHHHHHHTT xx xxx x x
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4lk1_J

>4lk1_J mol:protein length:1407 DNA-directed RNA polymerase subunit beta'
982-1040
.................LKLIDEFGRTK..ESY...........................KVPYGAVLAKGDGEQVAGGETVANwdpHTMP..VITEVSGFVRFTDM
1042-1116
DGQTITRqtdeltglssLVVLDSAERTAggKDL...........................RPALKIVDAQGNDVLIPGTDMPAQ...YFLPgkAIVQLEDGVQIS..
1117-1189
SGDTLAR..........................ipqesggtkditgglprvadlfearrpKEP..AILAEISGIVSFGKETKGK...RRL...VITPVDGSDPYEEM
xxxxxxxxxxxxxxxxxEEEE SSS EExxEEExxxxxxxxxxxxxxxxxxxxxxxxxxxE TT EES TT TT B EExxx TTxx EE SS EEEE
BTTTEEExxxxxxxxxxEE SSS EEExxEE xxxxxxxxxxxxxxxxxxxxxxxxxxx TTT TTTTT EEEEE TTSSxxxB BSxxTTSSSB EEE xx
TT SEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxE xx HHHHHHHHxxxTT xxx SS B SSSSE
53-87
RDGLFCARIFGpvkdyecLCGK.YKRLKHRGVICEK
883-911
RSVVSCDTDFG.......VCAHcYGRDLARGHIINK
SSBSS TTTT xxxxxxx SBTxTB SSSS SSS
TTT TTSxxxxxxxB HHxHH SSSSS
11-27
QTKTEEFDAIKIALASP
94-110
QTKVRRERMGHIELASP
SEEEEE H
GGGGTT EEEEEEEEE
497-548
...................................................................EP.IIVPSQD.VVLGLYY.MTRDCVNAKGEGMVLtgPKEAERLYRSGLASLhARV
549-664
KVRITEYEKDANGELVAKTSLKDTTVGRAILWM.IVPKGLPYSIVNQALGKKAISKMLNtcyRILGLKPTVIFADQI.MYTGFAY.AARSGASVGIDDMVI..PEKKHEIISEAEAEV.AEI
1284-1395
RVKIANRELEANGKVGATYSRDLLGITKASLATeSFISAASFQETTRVLTEAAVAGKRD...ELRGLKENVIVGRLIpAGTGYAYhQDRMRRRAAGEAPAA..PQVTAE...DASASL.AE.
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSBxS SHxHHHHHHHxHS SS TTTT EExxSSHHHHHHHHHTTSSx SS
EEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHTxTS TTS GGGGSS HHHHHHHHHxxxHHHHHH HHHHHHHHxHHHHHHHxHHHHHHTT GGGxxS TTHHHHHHHHHxHHH
HHHHHTTSSSSSSS B HHHHTT xS HHHHHHHS HHHHHHHHHHHT ExxxE SHHHHHHTTS x SSGGGHxHHHHHHHHHTT xx xxx x x
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4lk1_C

>4lk1_C mol:protein length:1342 DNA-directed RNA polymerase subunit beta
877-965
VTGGDILVGKVTPKG.eTQLTPEEKLlraifgekasdvkdsslrvPNGVSGTVIDVqVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
1060-1129
IQPGDKMAGRHGNKGviSKINPIEDM...................PYDENGTPVDI.VLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
E TT EEE EEE xx HHHHxxxxxxxxxxxxxxxxxxxHHHHHHT xSEEE EE TT EEEEEEEEEE TTS HH
TT BEE TTS xxBEEEEE TTxxxxxxxxxxxxxxxxxxxSS B TT B xSEEE TTHHHHTTB HHHHHHHHHHHHHHHHHH
86-160
QIRGVTYSAPLRVKLRLVIYEREAPE....GTVKDIKEQEVyMGEIPLMTDNGTFVinGTervivSQLHRspgvFFDSD
452-518
RIRSVGEMAENQFRVGLVRVERAVKErlslGDLDTLMPQDM.INAKPISAAVKEFF..GS.....SQLSQ....FMDQN
HHH EEEEEEEEEEEEE SSSS xxxx EEEEEEEEEExEEEEEE B TTS ExxESxxxxxSSSEExxxxEE EE
EE HHHHHHHHHHHHHHHHHHHHHHxxxxHHHH SSS xTTTSS SHHHHHHHxxHHxxxxxHHHSBxxxxTTEEE
176-214
IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIlRALN
241-278
LVPERLRGETASFDIEANGKVYVEKGRRITARHI.RQLE
EE SBS EEEE TT EEEETT EETHHHxHHHT
GGGGTT B SS EEETTEEEE TT B HHHHxHHHH
288-315
PVEYiaGKVVAkDYIDESTGELICAANM
776-800
PVER..GDVLA.DGPSTDLGELALGQNM
GGGxxGGS ExE S EE TTT EEE
EE TxxT EEExE TTEETTEE SSEEE
560-685
PIETP..EGPNIGLINSLSvyaqtnEYGFLETPYR.KVTDGvVTDEiHYLSAIEEGNYVIAQANSNLDEEGHF....VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL..EHDDAN.RALMGANM
1181-1308
PIATPvfDGAKEAEIKELL......KLGDLPTSGQiRLYDG.RTGE.QFERPVTVGYMYMLKLNHLVDDKMHArstgSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLtvKSDDVNgRTKMYKNI
SS xx SSSSSSS B xxxxxxSS EE TTS xEEEEExEEEExTTEEEEEEEEE HHHHTTS B SS xxxx EETTTEESSSEEEEE SS EEEEETTT EEES SSTTS TxxTGGGSTxTGGGB HH
EE xxTTT HHHHHHxxxxxxHHHTTT SSxSEE xB TTxT B SS EEEEEEEEEEBS THHHHxxxx EEESS BBSSS B SSS EEEHHHHHHHHHTT SxxHHHHHHxHTTTTT H
325-356
LSQSGHK.RIETLFTNDLDHGPYISETLRVDPT
521-553
LSEITHKrRISALGPGGLTRERAGFEVRDVHPT
HHTTT xEEEEE SSSS HHHHHHHT
HHHHHHHxS EES STTS TTT HHHHS G
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4lk1_I

>4lk1_I mol:protein length:1342 DNA-directed RNA polymerase subunit beta
877-965
VTGGDILVGKVTPKG.eTQLTPEEKLlraifgekasdvkdsslrvPNGVSGTVIDVqVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
1060-1129
IQPGDKMAGRHGNKGviSKINPIEDM...................PYDENGTPVDI.VLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
E TT EEE EEE xx HHHHxxxxxxxxxxxxxxxxxxxHHHHHHT xSEEE EE TT EEEEEEEEEE TTS HH
TT BEE TTS xxBEEEEE TTxxxxxxxxxxxxxxxxxxxSS B TT B xSEEE TTHHHHTTB HHHHHHHHHHHHHHHHHH
86-160
QIRGVTYSAPLRVKLRLVIYEREAPE....GTVKDIKEQEVyMGEIPLMTDNGTFVinGTervivSQLHRspgvFFDSD
452-518
RIRSVGEMAENQFRVGLVRVERAVKErlslGDLDTLMPQDM.INAKPISAAVKEFF..GS.....SQLSQ....FMDQN
HHH EEEEEEEEEEEEE SSSS xxxx EEEEEEEEEExEEEEEE B TTS ExxESxxxxxSSSEExxxxEE EE
EE HHHHHHHHHHHHHHHHHHHHHHxxxxHHHH SSS xTTTSS SHHHHHHHxxHHxxxxxHHHS xxxxTTEEE
176-214
IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIlRALN
241-278
LVPERLRGETASFDIEANGKVYVEKGRRITARHI.RQLE
EE SBS EEEE TT EEEETT EETHHHxHHHT
GGGGTT B SS EEETTEEEE TT B HHHHxHHHH
288-315
PVEYiaGKVVAkDYIDESTGELICAANM
776-800
PVER..GDVLA.DGPSTDLGELALGQNM
GGGxxGGS ExE S EE TTT EEE
EE TxxT EEExE TTEETTEE SSEEE
560-685
PIETP..EGPNIGLINSLSvyaqtnEYGFLETPYR.KVTDGvVTDEiHYLSAIEEGNYVIAQANSNLDEEGHF....VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL..EHDDAN.RALMGANM
1181-1308
PIATPvfDGAKEAEIKELL......KLGDLPTSGQiRLYDG.RTGE.QFERPVTVGYMYMLKLNHLVDDKMHArstgSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLtvKSDDVNgRTKMYKNI
SS xx SSSSSSS B xxxxxxSS EE TTS xEEEEExEEEExTTEEEEEEEEE HHHHTTS B SS xxxx EETTTEESSSEEEEE SS EEEEETTT EEES SSTTS TxxTGGGSTxTGGGB HH
EE xxTTT HHHHHHxxxxxxHHHTTT SSxSEE xB TTxT B SS EEEEEEEEEEBS THHHHxxxx EEESS BBSSS B SSS EE HHHHHHHHHTT SxxHHHHHHxHTTTTT H
325-356
LSQSGHK.RIETLFTNDLDHGPYISETLRVDPT
521-553
LSEITHKrRISALGPGGLTRERAGFEVRDVHPT
HHTTT xEEEEE SSSS HHHHHHHT
HHHHHHHxS EES STTS TTT HHHHS G
PDB View PDBsum View Pfam View