A Simple Perl CGI

Repeats regions & their secondary structure in the PDBID : 4m1m_A

>4m1m_A mol:protein length:1282 Multidrug resistance protein 1A

MELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGQVSKQSTQMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRSHHHHHH

117-148	IGAG.VLIVAYIQVSFW...CLAAGRQ..IHKIRQKFF
295-332	MGAAfLLIYASYALAFWygtSLVISKEysIGQVLTVFF
	HHHHxHHHHHHHHHHHHxxxHHHHHHHxxHHHHHHHHH
	HHHHxHHHHHHHHHHHHxxxHHHHHHHxxHTTSS HHH
161-628	VHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISmgaaflliyasyalafwygtslviskeYS...........................igqvltvffSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED..VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQtAG
804-1272	KNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGIT...........................FSftqammyfsyaaafrfgaylvtqqlmtfenvllvfsAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSrvVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ.AG
	SS HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH SHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SS SS SB SS EEEEEEEE SS SS EEEEEEEE TT EEEEES STHHHHHHHHHTTSS SEEEEEETTEEGxxGGB HHHHHHSEEEE SS SSBHHHHHHTT TT HHHHHHHHHTTT HHHHHHSTTGGG B SSSSS HHHHHHHHHHHHHHS SEEEEESSSTTS HHHHHHHHHHHHHHSTTSEEEEE SSTTTTTxTS
	T HHHHHHHHHTTTTGGGGGTHHHHHHHHHHHHHHHHHHHHHHHH SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTHHHHTTS HHHHHHHHHHHHHHHHHTHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHSSS SHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHS SS TT S S EEEEEEEE TT SS SEES EEE TT EEEEE SSSSSHHHHHHHHTTSS SEEEEEETTEEGxxGGS HHHHHHTEEEE SS SS HHHHHHTSS SS HHHHHHHHHHHTT HHHHHHSSSSS SSSS HHHHHHHHHHHHHHT SEEEEES SS TTHHHHHHHHHHHHHTTSEEEEE S SSxST
49-65	YMLVGTLAAII....HGVALP
706-722	YFVVGIFCAII....NGGLQP
724-741	.FSV.IFSKVVgvftNGG.PP
	HHHHHHHHHHHxxxxHHTHHH
	HHHHHHHHHHHxxxxHHHHHH
	xHHHxHHHHHHxxxxHHHxHS
771-793	FTFGkaGEILTKRLryMVFKSML
953-971	FRFG..AYLVTQQL..MTFENVL
	HHHHxxHHHHHHHHxxHHHHHHH
	HHHHxxHHHHHSSSxx SHHHH
638-653	CKSKDEidNLDMSSKD
669-682	CGPHDQ..DRKLSTKE
	xx
	xx H

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PDBsum View

Pfam View

Repeats regions & their secondary structure in the PDBID : 4m1m_B

>4m1m_B mol:protein length:1282 Multidrug resistance protein 1A

117-148	IGAG.VLIVAYIQVSFW...CLAAGRQ..IHKIRQKFF
295-332	MGAAfLLIYASYALAFWygtSLVISKEysIGQVLTVFF
	HHHHxHHHHHHHHHHHHxxxHHHHHHHxxHHHHHHHHH
	HHHHxHHHHHHHHHHHHxxxHHHHHHHxxHTTSSHHHH
161-628	VHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISmgaaflliyasyalafwygtslviskeYS...........................igqvltvffSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED..VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQtAG
804-1272	KNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGIT...........................FSftqammyfsyaaafrfgaylvtqqlmtfenvllvfsAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSrvVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ.AG
	SS HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTTTHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH SS TT SB SS EEESS BB SS SS BSS EEE TT EEEEES STHHHHHHHHHTTSS SBS BEETTEETxxTSB HHHHHHSEEEE SS SSBHHHHHHTT TT HHHHHHHHHHTT HHHHHHSTTGGG B SSSS HHHHHHHHHHHHHHH SEEEEESSSTTS HHHHHHHHHHHHHHSTTSEEEEE SSTTTTTxTS
	T HHHHHHHHHTTTGGGGGGTHHHHHHHHHHHHHHHHHHHHHHHH SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTHHHHTTTT HHHHHHHHHHHTHHHHHTHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHSS SHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHS SS TT SS EEEEEEEE SSS SS SEES EEE TT EEEEEESTTTTHHHHHHHHTTSS SEEEEEETTEEGxxGGS HHHHHHTEEEE SS SEEHHHHHHTSS SS HHHHHHHHHHTT HHHHHTSSSSS EE STT SS HHHHHHHHHHHHHHS SEEEEESTTTS TTHHHHHHHHHTTTTTTSEEEEE S SSxST
49-65	YMLVGTLAAIIHGVALP
706-722	YFVVGIFCAIINGGLQP
	HHHHHHHHHHHHHTHHH
	HHHHHHHHHHHHHHHHH
149-160	HAIMNQEIGWFD
790-801	KSMLRQDVSWFD
	HHHHHS HHHHH
	HHHHHS HHHHS
724-734	FSVIFsKVVGV
751-760	FSLLF.LILGI
	HHHHHxHHHHH
	HHHHHxHHHHH
638-653	CKSKDEidNLDMSSKD
669-682	CGPHDQ..DRKLSTKE
	xx
	xx

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