A Simple Perl CGI

Repeats regions & their secondary structure in the PDBID : 4pa0_B

>4pa0_B mol:protein length:1026 Myosin-7,Green fluorescent protein

MGDSEMAVFGAAAPYLRKSEKERLEAQTRPFDLKKDVFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLSRIITRTQAAEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFTYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKANFKTRHNIEDGGVQLADHYQQNTPIGNGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDYKDHD

854-919	GVQcfsrYPDHMKRHDFFKSA...MPEG.YVQERTIFFKDDgNYKTRAEVKFEGDTLVNrIeLKGIDFKE
962-1024	GVQ....LADHYQQNTPIGNGpvlLPDNhYLSTQSALSKDP.NEKRDHMVLLEFVTAAG.I.THGMDYKD
	GGGxxxx B TTTGGG HHHxxxHTTTxT EEEEEEEB x EEEEEEE xExEEEEEE
	ExxxxEEEEEEEE xxx xSEEEEEEEEE x SEEEEEEEEEExEx
603-620	ETVVGLYQKSSLKLLSTL
645-662	QTVSALHRENLNKLMTNL
	HHHHHHHHT SSHHHHHH
	HHHHHHHHHHHHHHHH
73-206	EDQVMQQNPpkfdkiedmAMLTFLHEPAVLYNLKDRYGSWMIYTYSGlfcvtvnpykwlpvytpevvaayRGKKRS...................EAPPHIFsisdnaYQyMLTDRENQ...SILITgesgaGKTVNTKRVIQYFAVIAAIGDRSK
217-328	EDQIIQANP.........ALEAFGNAKTVRNDNSSRFGKFIRIHFGA.......................TGKLASadietylleksrvifqlkaERDYHIF......YQ.ILSNKKPElldMLLIT.....NNPYDYAFISQGETTVASIDDAEE
	GGG EE xxxxxxxxxGGGTT SBGGG S SHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxTT EExxxxxxxxxxxxxxxxxxxEETTEEExxxxxxEEx SS S xxxSSHHHxxxxxHHHHTT GGGS HHHHHHHHH
	HHHHHHHHHxxxxxxxxxHHHHHHEE SS TTEE SEEEEEEEE GxxxxxxxxxxxxxxxxxxxxxxxGGEEEExxxxxxxxxxxxxxxxxxxEEEEEE xxxxxx xGGGGT xxxTT SxxxxxBHHHHHHHT SSHHHHHHHT S
469-486	DFNSFEQLCINFTNEKLQ
512-529	DFGMDLQACIDLIEKPMG
	SS HHHHHHHHHHHHHH
	TTGGGHHHHHHHHSTTS

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Repeats regions & their secondary structure in the PDBID : 4pa0_A

>4pa0_A mol:protein length:1026 Myosin-7,Green fluorescent protein

854-919	GVQcfsrYPDHMKRHDFFKSA...MPEG.YVQERTIFFKDDgNYKTRAEVKFEGDTLVNrIeLKGIDFKE
962-1024	GVQ....LADHYQQNTPIGNGpvlLPDNhYLSTQSALSKDP.NEKRDHMVLLEFVTAAG.I.THGMDYKD
	GGGxxxx B TTTGGG HHHxxxHTTTxT EEEEEEEEESxSS EEEEEEEEEE SSSxExEEEEE E
	EExxxxEEEEEEEESSSS xxx xSEEEEEEEEEE x TT S EEEEEEEEEEx x
603-620	ETVVGLYQKSSLKLLSTL
645-662	QTVSALHRENLNKLMTNL
	HHHHHHHHT SSHHHHHH
	HHHHHHHHHHHHHHHH
73-206	EDQVMQQNPpkfdkiedmAMLTFLHEPAVLYNLKDRYGSWMIYTYSGlfcvtvnpykwlpvytpevvaayRGKKRS...................EAPPHIFsisdnaYQyMLTDRENQ...SILITgesgaGKTVNTKRVIQYFAVIAAIGDRSK
217-328	EDQIIQANP.........ALEAFGNAKTVRNDNSSRFGKFIRIHFGA.......................TGKLASadietylleksrvifqlkaERDYHIF......YQ.ILSNKKPElldMLLIT.....NNPYDYAFISQGETTVASIDDAEE
	GGG EE xxxxxxxxxGGGTT SBGGG SS SHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxTT EExxxxxxxxxxxxxxxxxxxEETTEEExxxxxxEEx SS S xxxSSHHHxxxxxHHHHTT GGGS HHHHHHHHH
	HHHHHHHHHxxxxxxxxxHHHHHHEE SS TTEE SEEEEEEEE TxxxxxxxxxxxxxxxxxxxxxxxTSBEEExxxxxxxxxxxxxxxxxxxEEEEEE xxxxxx xGGGGT xxxTT SxxxxxBHHHHHHTT SSTHHHHHTT S
469-486	DFNSFEQLCINFTNEKLQ
512-529	DFGMDLQACIDLIEKPMG
	SSB HHHHHHHHHHHHHH
	GGGGGHHHHHHHHSTTS

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