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Repeats regions & their secondary structure in the PDBID : 4v1n_R

>4v1n_R mol:protein length:331 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT B
7-44
GAPALSNNST.NSVAKEKS.GNISG.....DEYLSQEEEVFDGND
198-242
GMSMRSDNSNfLKVGREKAkSNIKSirmpkKEILDYLFKLFDEYD
x x xxxxx
x x xxxxx
151-188
HEC..QVMPSMNDPNYHKIVEQRRNIVKLNNKERITTLDE
261-300
KECldKVATLVKKGPYAFKYTLRPEYKKLKEEERKATLGE
EEExxEE
xx
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Repeats regions & their secondary structure in the PDBID : 4v1n_Q

>4v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT A
59-68
VKKDDP.EYAE
90-100
VKDEDPnEYNE
x
xS EE
183-197
NKP....GTV.PLNNTARDG
292-311
NEPefeeGTMdPLADVAPDG
xxxx x
xxxx x
471-497
.................DEEAPIIDGNEQENKESEQRIKKEMLQ
498-529
ANAM..........glrDEEAP..SGNEEDELFGEKKIDEDGEK
531-571
KKALqktelaalyssdeDEINPYLSESDIENKENEPSVKKE...
xxxxxxxxxxxxxxxxx
xxxxxxxxxxxxx xx
xxxxxxxxxxxxx xxx
205-228
SAIKDNATnGVNSMTATATGSSVP
236-258
SAVENNAV.AIGSSGASGTVATDP
x
x
573-599
DIDSLSKSKKSSPKKQQKKTANAHVHK
610-636
DCVIILKGDKKVLKSFPEGEWNPHAAK
360-375
YEAGNSDSYVLLSVED
388-403
YKFTARNKYATLTIDE
E SSEEEEEEE S
EEEEE TT SHH
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Repeats regions & their secondary structure in the PDBID : 4v1n_O

>4v1n_O mol:protein length:181 TATA-BOX-BINDING PROTEIN
8-72
LQNIVATVTLGCRLDLKTVAL.HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDD
98-163
IQNIVGSCDVKFPIRLEGLAFsHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREE
EEEEEEEEE S HHHHHHxHSSSEE TTT SSEEEEETTTTEEEEE TTSEEEEEEESSHHH
EEEEEEEEE SS B HHHHHHxHTTTTEE TTT SSEEEE SSS EEEE TTSEEEEEEESSHH
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Repeats regions & their secondary structure in the PDBID : 4v1n_M

>4v1n_M mol:protein length:345 TRANSCRIPTION INITIATION FACTOR IIB
101-122
.................TTDMRFT.....KELNKAQGK..NVMDKK
133-171
ITML...CDAAELPKIVKDCAKEAYKL.CHDEKTLKGK..SMESI.
185-213
...VARTFKEIQSLIHVKTK.EF.GKT.LNIMKNI...........
236-278
LTYIPRFCSHLGLPMQVTTSAEYTAKK.CKEIKEIAGK..SPITIA
288-330
LFQIPITAAKVGQTLQVT...EGTIKSgYKILYEHRDKlvDPQLIA
xxxxxxxxxxxxxxxxxSB HHHHxxxxxHHHHHSSSSxx
HHHHxxxHTTTT HHHHHHHHHHHHTxTTT TTT S xx TTTSx
xxx HHHHHHHS TTxHHxHHHxHHHTTT xxxxxxxxxxx
HHHHHHHHHHHT HHHHHHHHHHHHHxHHHHT SSS xx HHHHH
HSSS HHHHHHHHT xxxHHHHHHxHHHHHHTTHHxxHHS TT
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Repeats regions & their secondary structure in the PDBID : 4v1n_A

>4v1n_A mol:protein length:1733 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
1537-1554
VSSPGFSPTSPTYSPTSP
1558-1575
PTSPSYSPTSPSYSPTSP
1579-1596
PTSPSYSPTSPSYSPTSP
1600-1617
PTSPSYSPTSPSYSPTSP
1621-1638
PTSPSYSPTSPSYSPTSP
1642-1659
PTSPSYSPTSPSYSPTSP
1663-1680
PTSPSYSPTSPSYSPTSP
1684-1701
PTSPSYSPTSPNYSPTSP
1705-1719
PTSPGYSPGSPAYSP...
xxx
1463-1494
EDGQDGGVTPYSN.ESGLVNADLDVKDELMFSP
1501-1533
NDAMAGGFTAYGGaDYGEATSPFGAYGEAPTSP
x
x
995-1039
ENLLVLRGKNeIIQNAQRDAVTLFCCllrSRLATRR.VLQEYRL..TK
1062-1102
EMVGVLAAQS.IGEPATQMTLNTFHF...AGVASKK.VTSGVPR..LK
1103-1144
EILNV..AKN.MKTPSLTVYLEPGHA...ADQEQAKlIRSAIEHttLK
HT S SSxHHHHHHHHHHHHHHHxxxHHHHHHTx HHHHHHxxTS
HHHHHHHHxHHHHHHT xxx x SHHHxxHH
HHHTTxx SSx SS EEEEB SSTTxxxS HHHHHxHHHHHHSxx
308-333
IAGQPQ.ALQKSGRPvKSIRARLKGKE
353-378
ISGDPNlELDQVGVP.KSIAKTLTYPE
SBS xEEETTTEEx HHHHHSST
EEEETTxS TTEEEExEHHHHHH EEE
1241-1277
RVVRPK......SLDAETEAEEDHMLKKIENTMLENITLRGVE
1281-1323
RVVMMKydrkvpSPTGEYVKEPEWVLETDGVNLSEVMTVPGID
EE xxxxxx HHHHHHHHHHHHHH B SS T
EEEEEExxxxxxE EEE TTSSEEE EEEEEEES HHHHH
153-199
PSEDDPTQLVSR..GGCGNTQPTIRKDGLKLVGSWKKDRATGDADePEL
396-443
PNEHPGAKYVIRdsGDRIDLRYSKRAGDIQLQYGWKVERHIMDND.PVL
E SS SSSEEE xxS B EEEEESSS EEEEE STTT SxS E
TTSSS EEEEE xxTTS EEETTT TTSSS TT EEEEE TxT E
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Repeats regions & their secondary structure in the PDBID : 4v1n_B

>4v1n_B mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
628-716
TDAGRVY...RPLFIVEDDESLGHKELKVrkGHIAKLMATEYqdieGGF..EDVEEYTWSSlLNEGLVE......YIDAEEEESILIAMQPEdlEPAEAN
791-881
TMANILYypqKPLGTTRAMEYLKFRELPA..GQNAIVAIACY....SGYnqEDSMIMNQSS.IDRGLFRslffrsYMDQEKKYGMSITETFE..KPQRTN
SS EExxxEEEEEEES SSSS EES xxBHHHHHHHHHHxxxxHHTxx x HHHHxxxxxxHHTTSEEEEEHHHHTT xx EESSS
S EEEESxxxS B SEE GGGGTTTTTTxxS SEEEEEEEExxxxB xxSSTT TTEEExEEHHHHHxxxxxxTTTT EEEEEEEEEE xxEETTTE
141-169
DVPGRELkYELIAEESED.....DSESGKVFIGR
304-336
DVNDWQM.LEMLKPCVEDgfviqDRETALDFIGR
x xxxxx EEEEE
SS HHHxHHTTHHHHHHxxxxxTSS SHHHHH
98-119
TKPMVNesdGVTHALYPQEARL
578-596
TRVFVN...GVWHGVHRNPARL
EEEEEExxx TTS EEE HHH
EEEEESxxxS EEEEES HHHH
474-539
SSRAG.VSQVLNRYTYSS.TLSHLRRTNTPIGRDG.KLAKpRQLHNTHWGLVCPAETPEGQACGLVKNL
943-1010
STENGiVDQVLVTTNQDGlKFVKVRVRTTKIPQIGdKFAS.RHGQKGTIGITYRREDMPFTAEGIVPDL
SS TTxSEEE SSHHHxHHHHTTEEE x xTTS GGGTTTB SS SSTTTTTEEE
TT xEEEEEEEEE TTx EEEEEEEEEEE xSS ExEE TTS EEEEEEEE TTTS EETTS
283-298
VIIFRALGIIPDGEIL
910-925
VIIGKTTPISPDEEEL
HHHHHHHT STTHHH
EEE EEEE
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Repeats regions & their secondary structure in the PDBID : 4v1n_C

>4v1n_C mol:protein length:318 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3
165-191
KEHAK.WGPAAAIEFEyDPWNKLKHTDY
195-221
QDSAKeWPQSKNCEYE.DPPNEGDPFDY
TT GGxG EEEEEEEx SS TT S
S HHHxHS GGGGGxS SSS
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Repeats regions & their secondary structure in the PDBID : 4v1n_D

>4v1n_D mol:protein length:221 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4
20-31
EEENAATLQLGQ
43-54
EEEELIALNLSE
BTTTB S
EEE EE TTH
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Repeats regions & their secondary structure in the PDBID : 4v1n_E

>4v1n_E mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I, II, AND III S
31-60
TQEEV.ELP.LEDFKAKYCDSMGRPQRKMMSF
65-96
TEESIsKFPdMGSLWVEFCDEPSVGVKTMKTF
HHHHxT xHHHHHHHHB TTS B HHHH E
HHHHxHH xTT EEEEE SSSEE HHHHH
126-169
SIPPaTIETFNEAALVVNITHHELVpKHIRLSSDEKRelLKRYR
173-212
SQLP.RIQRADPVALYLGLKRGEVV.KIIRKSETSGR..YASYR
SSTTxSEEEEEEHHHHTS GGGSTTx EEEE HHHxxHHHHH
GGS xEE TT HHHHHTT TT EExEEEEEETTTEExxEEEEE
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Repeats regions & their secondary structure in the PDBID : 4v1n_F

>4v1n_F mol:protein length:155 DNA-DIRECTED RNA POLYMERASES I, II, AND III S
10-23
DGneNFEDFDVEHF
140-151
DG..SFEDWSVEEL
xx
TSxx EEEEETTTS
63-75
QIRRKTLKEKAIP
119-131
RIAMKELAEKKIP
HHHHHHHHTT
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Repeats regions & their secondary structure in the PDBID : 4v1n_H

>4v1n_H mol:protein length:146 DNA-DIRECTED RNA POLYMERASES I, II, AND III S
33-51
QDQcklTLDINVELFPVAA
52-70
QDSltvTIASSLNLEDTPA
SSxxx EEEEEE TTTS
T ExxxEEEE S
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