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Repeats regions & their secondary structure in the PDBID : 4xlp_A

>4xlp_A mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
HHxHHHHHHHHxxHHHH B
xEEEETT SxxSTT
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxHHSS EEESxx TT SEEEEEEEExx SSx EE
EExES xTT EEEEB TxxT EEEEEEEE xxBSExE T
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Repeats regions & their secondary structure in the PDBID : 4xlp_B

>4xlp_B mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
HHxHHHHHHHHxxHHHT B
EExEEEESS xxSSS
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxHHHH EEESxx TT SEEEEEEEExxESSxEEE
EExES x S EEEEE TxxT EEEEEEEEE xxBSExE T
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Repeats regions & their secondary structure in the PDBID : 4xlp_C

>4xlp_C mol:protein length:1119 DNA-directed RNA polymerase subunit beta
110-287
ED.EVF...LGHlPL......MT.EDGSfI.........INGADRVI.VSQ.iHRSPGVYFTP....DPARPGRYIA.S.IIPL...PKRGPW..IDLEVEASG.....VVTMKVNK...RKFplVL.LLRV......LGYDQETLVRELSAYgDLVQGL..LDEA.VL.AMRPEEAMVRLFTLLRPGD......PPKKDKAL..AYLFG...LLadpkRYDLGEAGRYKAEEKLGV..G..LSG....
296-481
...GEFkdeVFL.PTLRY..LFAlTAGV.PghevddidhLGNR.RIRtV........GELMADqfrvGLAR....LARGvRERM...VMGSP...D..TLTPAK.....LVNSRPLEaalREF..FS.RSQL......SQFKDET..NPLSSL.RHKRRISALGPG.GLtRE.......RAGFDVR..D..VHRTHY.GRICPveTPEGAnigLI....TSL.AAYARVDALGFIRTPYRrvKNGVVTE
482-608
EV.VYM...TAS.EEDRYtiAQA.NTPL.E.........GDRIATDR.VVA..R.RRGEPVIV....APEEVE.FMDVSpKQVFslnTNLIPF....LEHDDA........NRALMG...SNM..QTqAVPL......IRAQAPVVMTGL.EE.RVVRD....SLA.AL.Y.AEEDGEV..................................................VK...............VDG
616-802
ED.GRL...VEH.PLRRY..ARS.NQGT.A.........FDQRPRVR.VGQ..RVKKGDLLAD....GPASEEGFLALG.QNVL...VAIMPF..DGYNFEDAI.....VISEELLK...RDF..YT.SIHI......ERYEIEARDTKLGPE.RITRDIPHLSEA.AL.RDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEP..SPEER...LL....RSIFGEKARDVKDTSLRVPPG..EGGIVVG
809-990
GDpGVE...LKP.GVREV..V.......................RVF.VAQkrKLQVGDKLAN....RHGN.KGVVA....KIL..pVEDMPHlpDGTPV.DVIlnplgVPSRMNLG...QIL..ET.HLGLagyflgQRYISPVFDGATEPE...IKEL..LAEAfNL.YFGKRQG.EGFGVDKREKEVL.ARAEKLGLVSPgkSPEEQ....L....KELF.DLGKVVLYDGRTGEPF..EGPIVVG
xB xxx EExEExxxxxx x SSSx xxxxxxxxxEEETTEEExEE xxEEEEE SEEExxxxEEE SS TTSxExEEEExxxE STTSxx EEEEE xxxxxTTS EEEExxxSSSxx xB HHxxxxxxHHHGGGT HHHHHTxTT SSSxxTTSTxTTx HHHHHS HHHHHHHHHHxxxxxxHH SS xx HHHHxxxHHxxxxHHHHHTT TTT HHHxxHxxHHHxxxx
xxxTEExxxEESxSHHHHxxHHHxHHHHxTxxxxxxxxxTT TxT x xxxxxxxx SS TxxxxTSEExxxxEE HxHHHHxxxHHHHHxxxHxxHHHHHHxxxxxHHHHHHHSxxxSS xxSSxS HxxxxxxHHH SHxxHHHHHHxHHHHHT TTEEEx x SxxxxxxxSHHHHHHxxHxxHHEEESx STTSxx TTTxxx xxxxHHHxHS GGGTTTB SS xxSSTTTTT
EExEEExxx HHxHHHHSxxEEEx TTSx xxxxxxxxxBSSSBB xSSExxExEEESS EExxxxEE TTSx EEExS GGxxxGGS TTxxxxGGG TTxxxxxxxxGGGB HxxxHHHxxHHxHHHHxxxxxxHHTB SS x SxEE S xxxxHHHxHHxHxHTT SEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx SxxxxxxxxxxxxxxxSSE
TTxS ExxxEEExE SxxB xSSSBx xxxxxxxxxB B xTT xxEE TT EEE xxxx TTEETTEE SxEEEExxxEEBS xxTTTSTTTEExxxxxEEETHHHHxxxTTTxxT xEEEExxxxxxEEEEEEEEB SS B xB S SS SGxGGxTT TTTSB TT EE TT EEE EEE xx HHHHxxxHHxxxxHHHH SEEE EE TTxx EEEEE
TSxTT xxx xTTEEExxExxxxxxxxxxxxxxxxxxxxxxxEEExEEExxEEE TT BxxxxEEETxTS xxxxEEExxxEEE SSxxS B xTTSxxxxx B S B xxxTTHxxHHxHHTBxxxxxx HHHHHHHHHHHHHHxxxHT ExxEE xSSxS HHHxHHHHHHHHHHHHHxHHHHHTT xxHHHHHxxxxHxxxxHHHHxHHTTSS TTS HHHHHxxHHHHTTT
16-51
PPLTeiQVESYKKALQADVPPEKRenvgIQAAFKET
76-105
PPFS..QDECREKDLTYQAPLYAR....LQLIHKDT
TTxxHHHHHHHHHTT SSS TTxxxxT S THH
SS xxHHHHHHHT EEEEEEExxxx EEETTT
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Repeats regions & their secondary structure in the PDBID : 4xlp_D

>4xlp_D mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
171-226
LPAGVDALVKDGEEVVKGQELAPGV.....VSRMD..GVAL..YRFPRRVRVDYLRKE......................raalriP
227-283
LSAWVEKEAYRPGEVL..AELSEPY.....LFRAEesGVVE..LKDLAEGHLIYLRQE.....................eevvaryF
284-354
LPAGMTPLVVEGEIVEVGQPLAEG..........K..G..L..LRLPRHMTAKEVEAEeegdsvhltlflewtepkdykvaphmnvI
355-402
VPEG..AKVQAGEKIVAAIDPEEEV.....IAEAE..GVVH..LHEPASILV...VKA.........................rvyP
403-442
F........EDDVEVTTGDRVAPGD.....VLADG..GKVK..SEIYGRVEVDLVRN..............................
452-494
....IDA..RMGAEAI..QELLKEL....dLEKLE..RELLeeMKHPSRARRAKARK..............................
1305-1340
LPKDARLLVKDGDYVEAGQPLTRGAidphqLLEAK..G.................................................
TT SS TTEEE TT EEETTExxxxxE SSSxxEEEExxEEEEEEEEEEEEEEExxxxxxxxxxxxxxxxxxxxxxxxxxxxE
TTT SS TT xx SS ExxxxxEEE SxxS EExxEEEEEETTEEEEEEExxxxxxxxxxxxxxxxxxxxxxxxxxxxS
E TTEEE S TT EE TT EEEEExxxxxxxxxx xxSxx xx SSEEEES ExxxxxxxxxxxxxxxxxxxxxxxxxxxxE
S TTxxEEE TT B EEESSTTT xxxxxB SSSxxEEEExxEEEEEEEEExxxE xxxxxxxxxxxxxxxxxxxxxxxxxxxxE
xxxxxxxxSS SS TT EE TTExxxxxE HHHxxHT ExxE S EEEEEETTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxx EExxE SHHHHxxHHHHHH xxxxx HHHHxxHHHHxxHHHHT S HHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
E SSS BS TT EE TT BSBSSBxxxxx HHHxxHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
831-841
GR..ETSVGRLKF
870-882
GRrlETSPGRILF
TExxEEEHHHHH
TExxEEEE HHHH
715-731
AFQPVLVEGQSIQLH.PL
735-751
AFNADF.DGDQMAVHvPL
753-769
SFAQAEARIQMLSAH.NL
EE SSSSEEE xTT
HHT xSS EEEEEx
HHHHHHHHHTSBTTTx
2-29
KKEVRKVRIALASPEK.IRSWSYGEV..EKP
796-826
RKEKKGAGMAFATPEEaLAAYERGEValNAP
EEEEEE HHHxHHHHEEEE xx
SSS S EESSHHHxHHHHHHHTSxxS S
591-637
VTNPGSERPLRSltDILSgkqgRFRQNLLGKRVDYSGRSVIVVGPQL
1381-1421
VTDPGDSRLLEG..QVLE....KWDVEALNERLIAEGKVPVAWKPLL
B TT B xxHHHHxxxxHSSTTSTTTTTTSSEE SSEEEEEE
ESS TTSS TTxx EEExxxxHHHHHHHHHHHHHTT EEEE
72-91
VCERC.GVEVtrSIVRRYRMG
1200-1218
VCQKCyGYDL..SMARPVSIG
B TTTx B xxS GGGGTT
HHHxH EExxTTTTEE T
326-346
EEGDSvHLTLFLEwTE..PKDYK
1284-1304
EEGED.RLSVFVE.SEgfSKEYK
EETTExEEEEEEExEExxEEEEE
E SSxSEEEEEEx SxxS EEE
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Repeats regions & their secondary structure in the PDBID : 4xlp_F

>4xlp_F mol:protein length:347 RNA polymerase sigma factor SigA
31-53
EEGMEAIKKLSE.ATGLDQELIRE
190-209
....ETINKLSRtARQLQQELGRE
213-230
EEIAEAM......GPGWDAKRVEE
HHHHHHHHHHHHxHT HHHHHH
xxxxHHHHHHHHxHHHHHHHHHSS
HHHHHHTxxxxxx TT HHHHHH
75-113
PDPKTVEEVDGKLKS.LPKELKRYLHIAREGEAA....RQHLIE
258-301
PDENLPSPVEAAAQSlLSEELEKALSKLSEREAMvlklRKGLID
IIIIIHHHHHHHHSxS HHHHHHHHHHHHHHHHxxxxHHHHHH
B SSS HHHHHHHHxHHHHHHHHHHTTS HHHHxxxxHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4xlp_G

>4xlp_G mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
HHxHHHHHHHHxxHHHH B
xEEEETT SxxSTT
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxHHSS EEESxx TT SEEEEEEEExx SSx EE
EExES xTT EEEEB TxxT EEEEEEEE xxBSExE T
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Repeats regions & their secondary structure in the PDBID : 4xlp_H

>4xlp_H mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
HHxHHHHHHHHxxHHHT B
EExEEEESS xxSSS
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxHHHH EEESxx SS SEEEEEEEExxESSxEEE
EExES x S EEEEE TxxT EEEEEEEEE xxBSExE T
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Repeats regions & their secondary structure in the PDBID : 4xlp_I

>4xlp_I mol:protein length:1119 DNA-directed RNA polymerase subunit beta
110-287
ED.EVF...LGHlPL......MT.EDGSfI.........INGADRVI.VSQ.iHRSPGVYFTP....DPARPGRYIA.S.IIPL...PKRGPW..IDLEVEASG.....VVTMKVNK...RKFplVL.LLRV......LGYDQETLVRELSAYgDLVQGL..LDEA.VL.AMRPEEAMVRLFTLLRPGD......PPKKDKAL..AYLFG...LLadpkRYDLGEAGRYKAEEKLGV..G..LSG....
296-481
...GEFkdeVFL.PTLRY..LFAlTAGV.PghevddidhLGNR.RIRtV........GELMADqfrvGLAR....LARGvRERM...VMGSP...D..TLTPAK.....LVNSRPLEaalREF..FS.RSQL......SQFKDET..NPLSSL.RHKRRISALGPG.GLtRE.......RAGFDVR..D..VHRTHY.GRICPveTPEGAnigLI....TSL.AAYARVDALGFIRTPYRrvKNGVVTE
482-608
EV.VYM...TAS.EEDRYtiAQA.NTPL.E.........GDRIATDR.VVA..R.RRGEPVIV....APEEVE.FMDVSpKQVFslnTNLIPF....LEHDDA........NRALMG...SNM..QTqAVPL......IRAQAPVVMTGL.EE.RVVRD....SLA.AL.Y.AEEDGEV..................................................VK...............VDG
616-802
ED.GRL...VEH.PLRRY..ARS.NQGT.A.........FDQRPRVR.VGQ..RVKKGDLLAD....GPASEEGFLALG.QNVL...VAIMPF..DGYNFEDAI.....VISEELLK...RDF..YT.SIHI......ERYEIEARDTKLGPE.RITRDIPHLSEA.AL.RDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEP..SPEER...LL....RSIFGEKARDVKDTSLRVPPG..EGGIVVG
809-990
GDpGVE...LKP.GVREV..V.......................RVF.VAQkrKLQVGDKLAN....RHGN.KGVVA....KIL..pVEDMPHlpDGTPV.DVIlnplgVPSRMNLG...QIL..ET.HLGLagyflgQRYISPVFDGATEPE...IKEL..LAEAfNL.YFGKRQG.EGFGVDKREKEVL.ARAEKLGLVSPgkSPEEQ....L....KELF.DLGKVVLYDGRTGEPF..EGPIVVG
x xxx EExEExxxxxx x SSSx xxxxxxxxxEEETTEEExEE xxEEEEE SEEExxxxEEE SS TTSxExEEEExxxE TTSxx EEEEE xxxxxTTS EEEExxxSSSxx xB HHxxxxxxHHHGGGT HHHHHTxTT SSSxxTTSTxTTx HHHHHS HHHHHHHHHHxxxxxxHH SS xx HHHHxxxHHxxxxHHHHHTT TTT HHHxxHxxHHHxxxx
xxxTEExxxEESxSHHHHxxHHHxHHHHxTxxxxxxxxxTT TxT x xxxxxxxx SS TxxxxTSEExxxxEE HxHHHHxxxHHHHHxxxHxxHHHHHHxxxxxHHHHHHHSxxxSS xxSSxS HxxxxxxHHH SHxxHHHHHHxHHHHHT TTEEEx x SxxxxxxxSHHHHHHxxHxxHHEEESx STTSxx TTTxxx xxxxHHHxHS GGGTTTB SS xxSSTTTTT
EExEEExxx HHxHHHHSxxEEEx TTSx xxxxxxxxxBSSSBB xSSExxExEEESS EExxxxEE TTSx EEExS GGxxxGGS TTxxxxGGG TTxxxxxxxxGGGB HxxxHHHxxHHxHHHHxxxxxxHHTB SS x SxEE S xxxxHHHxHHxHxHTT SEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx SxxxxxxxxxxxxxxxSSE
TTxS ExxxEEExE SxxB xSSSBx xxxxxxxxxB B xTT xxEE TT EEE xxxx TTEETTEE SxEEEExxxEEBS xxTTTSTTTEExxxxxEEETHHHHxxxTTTxxT xEEEExxxxxxEEEEEEEEB SS B xB S SS SGxGGxTT TTTSB TT EE TT EEE EEE xx HHHHxxxHHxxxxHHHH SEEE EE TTxx EEEEE
TSxTT xxx xTTEEExxExxxxxxxxxxxxxxxxxxxxxxxEEExEEExxEEE TT BxxxxEEETxTS xxxxEEExxxEEE SSxxS B xTTSxxxxx B S B xxxTTHxxHHxHHTBxxxxxx HHHHHHHHHHHHHHxxxHT ExxEE xSSxS HHHxHHHHHHHHHHHHHxHHHHHTT xxHHHHHxxxxHxxxxHHHHxHHTTSS TTS HHHHHxxHHHHTTT
16-51
PPLTeiQVESYKKALQADVPPEKRenvgIQAAFKET
76-105
PPFS..QDECREKDLTYQAPLYAR....LQLIHKDT
TTxxHHHHHHHHHTT SSS TTxxxxT S THH
SS xxHHHHHHHT EEEEEEExxxx EEETTT
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Repeats regions & their secondary structure in the PDBID : 4xlp_J

>4xlp_J mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
171-226
LPAGVDALVKDGEEVVKGQELAPGV.....VSRMD..GVAL..YRFPRRVRVDYLRKE......................raalriP
227-283
LSAWVEKEAYRPGEVL..AELSEPY.....LFRAEesGVVE..LKDLAEGHLIYLRQE.....................eevvaryF
284-354
LPAGMTPLVVEGEIVEVGQPLAEG..........K..G..L..LRLPRHMTAKEVEAEeegdsvhltlflewtepkdykvaphmnvI
355-402
VPEG..AKVQAGEKIVAAIDPEEEV.....IAEAE..GVVH..LHEPASILV...VKA.........................rvyP
403-442
F........EDDVEVTTGDRVAPGD.....VLADG..GKVK..SEIYGRVEVDLVRN..............................
452-494
....IDA..RMGAEAI..QELLKEL....dLEKLE..RELLeeMKHPSRARRAKARK..............................
1305-1340
LPKDARLLVKDGDYVEAGQPLTRGAidphqLLEAK..G.................................................
TT SS TTEEE TT EEETTExxxxxE SSSxxEEEExxEEEEEEEEEEE xxxxxxxxxxxxxxxxxxxxxxxxxxxx
xx xxxxx xx xx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxx xx xx xx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
S TTxxEEE TT B EEESSTTT xxxxxB SSSxxEEEExxEEEEEEEEExxxE xxxxxxxxxxxxxxxxxxxxxxxxxxxxE
xxxxxxxxSS SS TT EE TTExxxxxE HHHxxHT ExxE S EEEEEETTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxx EExxE SHHHHxxHHHHHH xxxxx HHHHxxHHHHxxHHHHTSS HHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
E SSS BS TT EE TT BSBSS xxxxx HHHxxHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
831-841
GR..ETSVGRLKF
870-882
GRrlETSPGRILF
TExxEEEHHHHH
TExxEEEE HHHH
715-731
AFQPVLVEGQSIQLH.PL
735-751
AFNADF.DGDQMAVHvPL
753-769
SFAQAEARIQMLSAH.NL
EE SSSSEEE xTT
HHT xSS EEEEEx
HHHHHHHHHTSBTTTx
2-29
KKEVRKVRIALASPEK.IRSWSYGEV..EKP
796-826
RKEKKGAGMAFATPEEaLAAYERGEValNAP
EEEEEE HHHxHHHHEEEE xx
SSS S EESSHHHxHHHHHHHTSxxS S
591-637
VTNPGSERPLRSltDILSgkqgRFRQNLLGKRVDYSGRSVIVVGPQL
1381-1421
VTDPGDSRLLEG..QVLE....KWDVEALNERLIAEGKVPVAWKPLL
B TT B xxHHHHxxxxHSSTTSTTTTTTSSEE SSEEEEEE
ESS TTSS TTxx EEExxxxHHHHHHHHHHHHHTT EEEE
72-91
VCERC.GVEVtrSIVRRYRMG
1200-1218
VCQKCyGYDL..SMARPVSIG
B TTTx B xxS TTHHHH
B HHHxH EExxTTTTEE T
326-346
EEGDSvHLTLFLEwTE..PKDYK
1284-1304
EEGED.RLSVFVE.SEgfSKEYK
x x xx EEEE
E SSxSEEEEEEx SxxS EEE
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Repeats regions & their secondary structure in the PDBID : 4xlp_L

>4xlp_L mol:protein length:347 RNA polymerase sigma factor SigA
31-53
EEGMEAIKKLSE.ATGLDQELIRE
190-209
....ETINKLSRtARQLQQELGRE
213-230
EEIAEAM......GPGWDAKRVEE
HHHHHHHHHHHHxHT HHHHHH
xxxxHHHHHHHHxHHHHHHHHHSS
HHHHHHTxxxxxx TT HHHHHH
75-113
PDPKTVEEVDGKLKS.LPKELKRYLHIAREGEAA....RQHLIE
258-301
PDENLPSPVEAAAQSlLSEELEKALSKLSEREAMvlklRKGLID
IIIIIHHHHHHHHSxS HHHHHHHHHHHHHHHHxxxxHHHHHH
B SSS HHHHHHHHxHHHHHHHHHHTTS HHHHxxxxHHHHHH
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