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Repeats regions & their secondary structure in the PDBID : 4xlr_L

>4xlr_L mol:protein length:347 RNA polymerase sigma factor SigA
31-53
EEGMEAIKKLSE.ATGLDQELIRE
190-209
....ETINKLSRtARQLQQELGRE
213-230
EEIAEAM......GPGWDAKRVEE
HHHHHHHHHHHTxTSS TTHHHH
xxxxHHHHHHHHxHHHHHHHHHTS
HHHHHHHxxxxxx TT HHHHHH
75-113
PDPKTVEEVDGKLKS.LPKELKRYLHIAREGEAA....RQHLIE
258-301
PDENLPSPVEAAAQSlLSEELEKALSKLSEREAMvlklRKGLID
STTTTHHHHHHSTTx HHHHHHHHHHHHHHHHxxxxHHHHHH
B SS HHHHHHHHxHHHHHHHHTTTTS HHHHxxxxHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4xlr_J

>4xlr_J mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
171-226
LPAGVDALVKDGEEVVKGQELAPGV.....VSRMD..GVAL..YRFPRRVRVDYLRKE......................raalriP
227-283
LSAWVEKEAYRPGEVL..AELSEPY.....LFRAEesGVVE..LKDLAEGHLIYLRQE.....................eevvaryF
284-354
LPAGMTPLVVEGEIVEVGQPLAEG..........K..G..L..LRLPRHMTAKEVEAEeegdsvhltlflewtepkdykvaphmnvI
355-402
VPEG..AKVQAGEKIVAAIDPEEEV.....IAEAE..GVVH..LHEPASILV...VKA.........................rvyP
403-442
F........EDDVEVTTGDRVAPGD.....VLADG..GKVK..SEIYGRVEVDLVRN..............................
452-494
....IDA..RMGAEAI..QELLKEL....dLEKLE..RELLeeMKHPSRARRAKARK..............................
1305-1340
LPKDARLLVKDGDYVEAGQPLTRGAidphqLLEAK..G.................................................
TT SS TTEEE TT SSSS xxxxx SS xxEEEExxEEEEEEEEEEE xxxxxxxxxxxxxxxxxxxxxxxxxxxx
xx xxxxx xx xx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxx xx xx xx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
S SSxx EE TT B EEESSTTT xxxxxB SSSxxEEEExxEEEEEEEEExxxESExxxxxxxxxxxxxxxxxxxxxxxxxxxxE
xxxxxxxx S SS TT EE TTExxxxxE TTTxxTTSExxE S EEEEEETTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxx B xx SHHHHxxHHHHHH xxxxx HHHHxxHHHHxxHHHHS SSHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
E SSS B S TT B TT B BSS xxxxxB HHHxxHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
831-841
GR..ETSVGRLKF
870-882
GRrlETSPGRILF
TExxEEEHHHHH
T xx EEE HHHH
715-731
AFQPVLVEGQSIQLH.PL
735-751
AFNADF.DGDQMAVHvPL
753-769
SFAQAEARIQMLSAH.NL
EEEEEEESSSSEEE xTT
TTT SxSS EEEEEx
HHHHHHHHHTSSTTTx
2-29
KKEVRKVRIALASPEK.IRSWSYGEV..EKP
796-826
RKEKKGAGMAFATPEEaLAAYERGEValNAP
EEEEEE HHHxHHHHEEEE xx S
STTTT EESSHHHxHHHHHHHTSxxS T
591-637
VTNPGSERPLRSltDILSgkqgRFRQNLLGKRVDYSGRSVIVVGPQL
1381-1421
VTDPGDSRLLEG..QVLE....KWDVEALNERLIAEGKVPVAWKPLL
BSTT B xxHHHHxxxxHSSSSSTTTTTTSSEE SSEEEEEE
EE TTSS TTxx EExxxxHHHHHHHHHHHHHTT EEEEE
72-91
VCERC.GVEVtrSIVRRYRMG
1200-1218
VCQKCyGYDL..SMARPVSIG
B SSSx B xxB TTHHHH
B STTxT B xxSTT SB S
326-346
EEGDSvHLTLFLEwTE..PKDYK
1284-1304
EEGED.RLSVFVE.SEgfSKEYK
x x xx EEEE
EE SSx EEEEE x SxxS B
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Repeats regions & their secondary structure in the PDBID : 4xlr_I

>4xlr_I mol:protein length:1119 DNA-directed RNA polymerase subunit beta
110-287
ED.EVF...LGHlPL......MT.EDGSfI.........INGADRVI.VSQ.iHRSPGVYFTP....DPARPGRYIA.S.IIPL...PKRGPW..IDLEVEASG.....VVTMKVNK...RKFplVL.LLRV......LGYDQETLVRELSAYgDLVQGL..LDEA.VL.AMRPEEAMVRLFTLLRPGD......PPKKDKAL..AYLFG...LLadpkRYDLGEAGRYKAEEKLGV..G..LSG....
296-481
...GEFkdeVFL.PTLRY..LFAlTAGV.PghevddidhLGNR.RIRtV........GELMADqfrvGLAR....LARGvRERM...VMGSP...D..TLTPAK.....LVNSRPLEaalREF..FS.RSQL......SQFKDET..NPLSSL.RHKRRISALGPG.GLtRE.......RAGFDVR..D..VHRTHY.GRICPveTPEGAnigLI....TSL.AAYARVDALGFIRTPYRrvKNGVVTE
482-608
EV.VYM...TAS.EEDRYtiAQA.NTPL.E.........GDRIATDR.VVA..R.RRGEPVIV....APEEVE.FMDVSpKQVFslnTNLIPF....LEHDDA........NRALMG...SNM..QTqAVPL......IRAQAPVVMTGL.EE.RVVRD....SLA.AL.Y.AEEDGEV..................................................VK...............VDG
616-802
ED.GRL...VEH.PLRRY..ARS.NQGT.A.........FDQRPRVR.VGQ..RVKKGDLLAD....GPASEEGFLALG.QNVL...VAIMPF..DGYNFEDAI.....VISEELLK...RDF..YT.SIHI......ERYEIEARDTKLGPE.RITRDIPHLSEA.AL.RDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEP..SPEER...LL....RSIFGEKARDVKDTSLRVPPG..EGGIVVG
809-990
GDpGVE...LKP.GVREV..V.......................RVF.VAQkrKLQVGDKLAN....RHGN.KGVVA....KIL..pVEDMPHlpDGTPV.DVIlnplgVPSRMNLG...QIL..ET.HLGLagyflgQRYISPVFDGATEPE...IKEL..LAEAfNL.YFGKRQG.EGFGVDKREKEVL.ARAEKLGLVSPgkSPEEQ....L....KELF.DLGKVVLYDGRTGEPF..EGPIVVG
EExEEExxxEEExEExxxxxx x SSSx xxxxxxxxx EETTEEExEE xxEEEEE SEEExxxxEEE SSSSS xExEEEExxxE STTSxxS EE xxxxxTTSS EE xxx SSxx xEETTxxxxxxTTTTTTT HHHHHHxHHTTTSxxS SGxGGx STTTTS TTTGGGHHHHxxxxxxHH TTS xx SGGGxxxTTxxxxTTTTTTT TTTS HHHxxHxxHHHxxxx
xxxSSBxxx SxSHHHHxxHHHxHHHHxHxxxxxxxxxHT TxT x xxxxxxxx SS GxxxxGGEExxxxEE HxHHHHxxxHHHHHxxxHxxHHHHHHxxxxxHHHHTTTTxxxSS xxSSxS HxxxxxxHHH SHxxHHHHHHxHHHTTTSTTEEEx x SxxxxxxxSHHHHHHxxHxxHTEEESx STTSxx TTSxxx xxxxHHHxHS TT TTSB SS S xxSSTTTTT
EExE xxxBHHxHHTTSxx B x TTSx xxxxxxxxxEETTEE SxSSBxx x EETTEE xxxx B TTTx EEExS GGxxxGGS TGxxxxGGG TTxxxxxxxxGGGB HxxxHHHxxHHxHHHHxxxxxxHHHB TT x SxEE S xxxxHHHxHHxHxHTT SEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx SxxxxxxxxxxxxxxxSSE
TTxS ExxxEEExE SxxB xTTSBx xxxxxxxxxB B S xSS xxEE TT EEE xxxx TT SSSS Sx ExxxEEBS xxTTTTTTT xxxxx BHHHHHxxxHTSxxSExEEEExxxxxxEEEEEE BTTB xB S SS TTxTTxSSB SSSBB TT B TT SB EEE xx HHHHxxxHHxxxxHHHS SEEE B TTxx BEEEE
T xTT xxx xTT xxExxxxxxxxxxxxxxxxxxxxxxxEEExEEExxEEEE TT BxxxxB TxTS xxxxB xxx B SSxxS B xTT xxxxx S B xxxSSHxxHHxHHTBxxxxxx HHHHHHHHHHHHHHxxxH xxEE xTTxSS HHHxHHHHHHHHHHHHHxHHHHHTT xxHHHHHxxxxHxxxxHHHHxTTTTSS TTS HHHHHxxHHHHHTT
16-51
PPLTeiQVESYKKALQADVPPEKRenvgIQAAFKET
76-105
PPFS..QDECREKDLTYQAPLYAR....LQLIHKDT
SSxxHHHHHHHHTTT SSS SSxxxxS SSTTT
SS xxHHHHHHHT EEEEEEExxxxEEEE TTT
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Repeats regions & their secondary structure in the PDBID : 4xlr_H

>4xlr_H mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
TTxTHHHHHHHxxHHHS
EExEEEETT xxSSSS
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxHHHH EEESxxSTT EEEEEEExx SSx EE
EExES x EEEEB TxxT EEEEEEE xxSSExE T
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Repeats regions & their secondary structure in the PDBID : 4xlr_G

>4xlr_G mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
HHxHHHHHHHHxxHTTS
xEEE SS SxxSSSS
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxTTTT EE Sxx SS EEEEExx TTx E
ExES xTT EEE B TxxT EEEEEE BxxSSExE G
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Repeats regions & their secondary structure in the PDBID : 4xlr_F

>4xlr_F mol:protein length:347 RNA polymerase sigma factor SigA
31-53
EEGMEAIKKLSE.ATGLDQELIRE
190-209
....ETINKLSRtARQLQQELGRE
213-230
EEIAEAM......GPGWDAKRVEE
HHHHHHHHHHHTxTSS TTHHHH
xxxxHHHHHHHHxHHHHHHHHHTS
HHHHHHHxxxxxx TT HHHHHH
75-113
PDPKTVEEVDGKLKS.LPKELKRYLHIAREGEAA....RQHLIE
258-301
PDENLPSPVEAAAQSlLSEELEKALSKLSEREAMvlklRKGLID
STTTTHHHHHHSTTx HHHHHHHHHHHHHHHHxxxxHHHHHH
B SS HHHHHHHHxHHHHHHHHTTTTS HHHHxxxxHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4xlr_D

>4xlr_D mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
171-226
LPAGVDALVKDGEEVVKGQELAPGV.....VSRMD..GVAL..YRFPRRVRVDYLRKE......................raalriP
227-283
LSAWVEKEAYRPGEVL..AELSEPY.....LFRAEesGVVE..LKDLAEGHLIYLRQE.....................eevvaryF
284-354
LPAGMTPLVVEGEIVEVGQPLAEG..........K..G..L..LRLPRHMTAKEVEAEeegdsvhltlflewtepkdykvaphmnvI
355-402
VPEG..AKVQAGEKIVAAIDPEEEV.....IAEAE..GVVH..LHEPASILV...VKA.........................rvyP
403-442
F........EDDVEVTTGDRVAPGD.....VLADG..GKVK..SEIYGRVEVDLVRN..............................
452-494
....IDA..RMGAEAI..QELLKEL....dLEKLE..RELLeeMKHPSRARRAKARK..............................
1305-1340
LPKDARLLVKDGDYVEAGQPLTRGAidphqLLEAK..G.................................................
TT SS TT EE TTEESSSS xxxxxEE S xxEEEExxEEEEEEEEEEEEE xxxxxxxxxxxxxxxxxxxxxxxxxxxx
TTT SSB TT xx SS xxxxxEEE SxxS EExx B BTTBEEEEEExxxxxxxxxxxxxxxxxxxxxxxxxxxxS
E TT EESS TT EE TT EEEE xxxxxxxxxx xxTxxTxx SS BB S ExxxxxxxxxxxxxxxxxxxxxxxxxxxxE
S TTxx EE TT EEEE SSTTS ExxxxxE SSSxxEEEExxEEEEEEEEExxxESExxxxxxxxxxxxxxxxxxxxxxxxxxxxE
xxxxxxxxSSS SS TTEEE SSExxxxxE STTxxT ExxE S EEEEEETTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxx B xx SHHHHxxHHHHHH xxxxx HHHHxxHHHHxxHHHHT SSHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
E SSS B S TT B TT B BSS xxxxxB HHHxxHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
831-841
GR..ETSVGRLKF
870-882
GRrlETSPGRILF
TExxEEEHHHHH
T xx EEE HHHH
715-731
AFQPVLVEGQSIQLH.PL
735-751
AFNADF.DGDQMAVHvPL
753-769
SFAQAEARIQMLSAH.NL
EE EEEESSSSEEE xTT
TTT SxSS EEEEEx
HHHHHHHHHTSSTTTx
2-29
KKEVRKVRIALASPEK.IRSWSYGEV..EKP
796-826
RKEKKGAGMAFATPEEaLAAYERGEValNAP
EEEEEE HHHxHHHHEEEE xx S
STTTT EESSHHHxHHHHHHHTSxxS T
591-637
VTNPGSERPLRSltDILSgkqgRFRQNLLGKRVDYSGRSVIVVGPQL
1381-1421
VTDPGDSRLLEG..QVLE....KWDVEALNERLIAEGKVPVAWKPLL
BSTT B xxHHHHxxxxHSSSSSTTTTTTSSEE SSEEEEEE
EE TTSS TTxx EExxxxHHHHHHHHHHHHHTT EEEEE
72-91
VCERC.GVEVtrSIVRRYRMG
1200-1218
VCQKCyGYDL..SMARPVSIG
B SSSx B xxB TTHHHH
B STTxT B xxSTT SB S
326-346
EEGDSvHLTLFLEwTE..PKDYK
1284-1304
EEGED.RLSVFVE.SEgfSKEYK
E SSExEEEEE xBExxEEEEE
EE SSx EEEEE x SxxS B
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Repeats regions & their secondary structure in the PDBID : 4xlr_C

>4xlr_C mol:protein length:1119 DNA-directed RNA polymerase subunit beta
110-287
ED.EVF...LGHlPL......MT.EDGSfI.........INGADRVI.VSQ.iHRSPGVYFTP....DPARPGRYIA.S.IIPL...PKRGPW..IDLEVEASG.....VVTMKVNK...RKFplVL.LLRV......LGYDQETLVRELSAYgDLVQGL..LDEA.VL.AMRPEEAMVRLFTLLRPGD......PPKKDKAL..AYLFG...LLadpkRYDLGEAGRYKAEEKLGV..G..LSG....
296-481
...GEFkdeVFL.PTLRY..LFAlTAGV.PghevddidhLGNR.RIRtV........GELMADqfrvGLAR....LARGvRERM...VMGSP...D..TLTPAK.....LVNSRPLEaalREF..FS.RSQL......SQFKDET..NPLSSL.RHKRRISALGPG.GLtRE.......RAGFDVR..D..VHRTHY.GRICPveTPEGAnigLI....TSL.AAYARVDALGFIRTPYRrvKNGVVTE
482-608
EV.VYM...TAS.EEDRYtiAQA.NTPL.E.........GDRIATDR.VVA..R.RRGEPVIV....APEEVE.FMDVSpKQVFslnTNLIPF....LEHDDA........NRALMG...SNM..QTqAVPL......IRAQAPVVMTGL.EE.RVVRD....SLA.AL.Y.AEEDGEV..................................................VK...............VDG
616-802
ED.GRL...VEH.PLRRY..ARS.NQGT.A.........FDQRPRVR.VGQ..RVKKGDLLAD....GPASEEGFLALG.QNVL...VAIMPF..DGYNFEDAI.....VISEELLK...RDF..YT.SIHI......ERYEIEARDTKLGPE.RITRDIPHLSEA.AL.RDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEP..SPEER...LL....RSIFGEKARDVKDTSLRVPPG..EGGIVVG
809-990
GDpGVE...LKP.GVREV..V.......................RVF.VAQkrKLQVGDKLAN....RHGN.KGVVA....KIL..pVEDMPHlpDGTPV.DVIlnplgVPSRMNLG...QIL..ET.HLGLagyflgQRYISPVFDGATEPE...IKEL..LAEAfNL.YFGKRQG.EGFGVDKREKEVL.ARAEKLGLVSPgkSPEEQ....L....KELF.DLGKVVLYDGRTGEPF..EGPIVVG
EExEEExxxEEExEExxxxxx x SSSx xxxxxxxxx EETTEEExEE xxEEEEE SEEExxxxEEE SSSSS xExEEEExxxE STTSxxS EE xxxxxTTSS EE xxx SSxx xEETTxxxxxxTTTTTTT HHHHHHxHHTTTSxxS SGxGGx STTTTS TTTGGGHHHHxxxxxxHH TTS xx SGGGxxxTTxxxxTTTTTTT TTTS HHHxxHxxHHHxxxx
xxxSSBxxx SxSHHHHxxHHHxHHHHxHxxxxxxxxxHT TxT x xxxxxxxx SS GxxxxGGEExxxxEE HxHHHHxxxHHHHHxxxHxxHHHHHHxxxxxHHHHTTTTxxxSS xxSSxS HxxxxxxHHH SHxxHHHHHHxHHHTTTSTTEEEx x SxxxxxxxSHHHHHHxxHxxHTEEESx STTSxx TTSxxx xxxxHHHxHS TT TTSB SS S xxSSTTTTT
ExE xxxBHHxHHTTSxx EEx TTSx xxxxxxxxxEETTEE SxSSBxx xEEETTEE xxxx B TTTx EEExS GGxxxGGS TGxxxxGGG TTxxxxxxxxGGGB HxxxHHHxxHHxHHHHxxxxxxHHHB TT x SxEE S xxxxHHHxHHxHxHTT SEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx SxxxxxxxxxxxxxxxSSE
TTxS ExxxEEExE SxxB xTTSBx xxxxxxxxxB B S xSS xxEE TT EEE xxxx TT SSSS Sx ExxxEEBS xxTTTTTTT xxxxx BHHHHHxxxHTSxxSExEEEExxxxxxEEEEEE BTTB xB S SS TTxTTxSSB SSSBB TT B TT SB EEE xx HHHHxxxHHxxxxHHHS SEEE B TTxx BEEEE
T xTT xxx xTT xxExxxxxxxxxxxxxxxxxxxxxxxEEExEEExxEEEE TT BxxxxB TxTS xxxxB xxx B SSxxS B xTT xxxxx S B xxxSSHxxHHxHHTBxxxxxx HHHHHHHHHHHHHHxxxH xxEE xTTxSS HHHxHHHHHHHHHHHHHxHHHHHTT xxHHHHHxxxxHxxxxHHHHxTTTTSS TTS HHHHHxxHHHHHTT
16-51
PPLTeiQVESYKKALQADVPPEKRenvgIQAAFKET
76-105
PPFS..QDECREKDLTYQAPLYAR....LQLIHKDT
SSxxHHHHHHHHTTT SSS SSxxxxS SSTTT
SS xxHHHHHHHT EEEEEEExxxxEEEE TTT
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Repeats regions & their secondary structure in the PDBID : 4xlr_B

>4xlr_B mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
TTxTHHHHHHHxxHHHS
EExEEEETT xxSSSS
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxHHHH EEESxxSTT EEEEEEExx SSx EE
EExES x EEEEB TxxT EEEEEEE xxSSExE T
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Repeats regions & their secondary structure in the PDBID : 4xlr_A

>4xlr_A mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
HHxHHHHHHHHxxHTTS
xEEE SS SxxSSSS
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxTTTT EE Sxx SS EEEEExx TTx E
ExES xTT EEE B TxxT EEEEEE BxxSSExE G
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