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Repeats regions & their secondary structure in the PDBID : 4xls_A

>4xls_A mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
HHxHHHHHHHHxxHTTS
xEEEESS SxxSTT
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxHHTT EE Sxx TT EEEEExx SSxEEE
ExES xTT EEEEE TxxT EEEEEE BxxSSExE G
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Repeats regions & their secondary structure in the PDBID : 4xls_B

>4xls_B mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
HHxHHHHHHHHxxHHH
EExEEEESS xxSSSS
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxHHHH EEESxxSTT S EEEEEEExx SSxEEE
EExES x S EEEEE TxxT EEEEEEE BxxSSExE T
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Repeats regions & their secondary structure in the PDBID : 4xls_C

>4xls_C mol:protein length:1119 DNA-directed RNA polymerase subunit beta
110-287
ED.EVF...LGHlPL......MT.EDGSfI.........INGADRVI.VSQ.iHRSPGVYFTP....DPARPGRYIA.S.IIPL...PKRGPW..IDLEVEASG.....VVTMKVNK...RKFplVL.LLRV......LGYDQETLVRELSAYgDLVQGL..LDEA.VL.AMRPEEAMVRLFTLLRPGD......PPKKDKAL..AYLFG...LLadpkRYDLGEAGRYKAEEKLGV..G..LSG....
296-481
...GEFkdeVFL.PTLRY..LFAlTAGV.PghevddidhLGNR.RIRtV........GELMADqfrvGLAR....LARGvRERM...VMGSP...D..TLTPAK.....LVNSRPLEaalREF..FS.RSQL......SQFKDET..NPLSSL.RHKRRISALGPG.GLtRE.......RAGFDVR..D..VHRTHY.GRICPveTPEGAnigLI....TSL.AAYARVDALGFIRTPYRrvKNGVVTE
482-608
EV.VYM...TAS.EEDRYtiAQA.NTPL.E.........GDRIATDR.VVA..R.RRGEPVIV....APEEVE.FMDVSpKQVFslnTNLIPF....LEHDDA........NRALMG...SNM..QTqAVPL......IRAQAPVVMTGL.EE.RVVRD....SLA.AL.Y.AEEDGEV..................................................VK...............VDG
616-802
ED.GRL...VEH.PLRRY..ARS.NQGT.A.........FDQRPRVR.VGQ..RVKKGDLLAD....GPASEEGFLALG.QNVL...VAIMPF..DGYNFEDAI.....VISEELLK...RDF..YT.SIHI......ERYEIEARDTKLGPE.RITRDIPHLSEA.AL.RDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEP..SPEER...LL....RSIFGEKARDVKDTSLRVPPG..EGGIVVG
809-990
GDpGVE...LKP.GVREV..V.......................RVF.VAQkrKLQVGDKLAN....RHGN.KGVVA....KIL..pVEDMPHlpDGTPV.DVIlnplgVPSRMNLG...QIL..ET.HLGLagyflgQRYISPVFDGATEPE...IKEL..LAEAfNL.YFGKRQG.EGFGVDKREKEVL.ARAEKLGLVSPgkSPEEQ....L....KELF.DLGKVVLYDGRTGEPF..EGPIVVG
x EExxxEEEx xxxxxx x SSSx xxxxxxxxx EETTEEExEE xxEEEEE SEE xxxx EE SS TT xExEEEExxxE TTTxxS EEEE xxxxxTTSS EEExxxSSSxx ExEEHHxxxxxxHHTTTTT TTHHHHxTGGGSSxxS SGxGGx STTTSS HHHHHHHHHHxxxxxxHH TTS xx SHHHxxxHHxxxxHHHTTTT TTT HHHxxHxxHHHxxxx
xxxSSExxxEESxSHHHHxxHHHxHHHHxTxxxxxxxxxTT TxT x xxxxxxxx TT SxxxxTTEExxxxEE HxHHHHxxxHHHHHxxxHxxHHHHHHxxxxxHHHHTTTTxxxSS xxSSxS HxxxxxxHHH SHxxHHHHHHxHHHHHHSTTEEEx x SxxxxxxxSHHHHHHxxHxxHSEEESx STTSxx TTTxxx SxxxxSTTxTS TT TTTB SS S xxSSTTTTT
EExEEExxx HHxHHHHSxx EEx TTSx xxxxxxxxxBSSSSB SxSSExxExEESSS EExxxxEE SSSx EEExS GGxxxGGS TGxxxxGGG TTxxxxxxxxGGGS HxxxHHHxxHHxHHHHxxxxxxHHHB TT x SxEE S xxxxHHHxHHxHxHTT SB xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx SxxxxxxxxxxxxxxxSSE
TTxS ExxxEEExE SxxB xSSSBx xxxxxxxxxB B S xSS xxEE TT SB xxxx SSEETTEE SxEEEExxx BS xxTTSSTTT Bxxxxx BTHHHHxxxTTTxxT xEEEExxxxxxEEEEEEEEB SS B xEE S SS TTxTTxSSB SSSBB TT B TT EEE EEEE xx HHHHxxxHHxxxxHHHH SEEE EE TTxx BEEEE
TSxTT xxx xTTEEExxExxxxxxxxxxxxxxxxxxxxxxxEEExEEExxEEE SS xxxxEEETxTS xxxx B xxx B SSxxSSEE xTTSxxxxx S B xxxTTHxxHHxHHT xxxxxx HHHHHHHHHHHHHHxxxH ExxEE xTTxS HHHxHHHHHHHHHHHHHxHHHHHTT xxHHHHHxxxxHxxxxHHHHxHHTTSS TTS HHHHHxxHHHHHHT
16-51
PPLTeiQVESYKKALQADVPPEKRenvgIQAAFKET
76-105
PPFS..QDECREKDLTYQAPLYAR....LQLIHKDT
TTxxHHHHHHHHHTT SSS SSxxxxS SSTTH
SS xxHHHHHHTT EEEEExxxxE EEESSS
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Repeats regions & their secondary structure in the PDBID : 4xls_D

>4xls_D mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
171-226
LPAGVDALVKDGEEVVKGQELAPGV.....VSRMD..GVAL..YRFPRRVRVDYLRKE......................raalriP
227-283
LSAWVEKEAYRPGEVL..AELSEPY.....LFRAEesGVVE..LKDLAEGHLIYLRQE.....................eevvaryF
284-354
LPAGMTPLVVEGEIVEVGQPLAEG..........K..G..L..LRLPRHMTAKEVEAEeegdsvhltlflewtepkdykvaphmnvI
355-402
VPEG..AKVQAGEKIVAAIDPEEEV.....IAEAE..GVVH..LHEPASILV...VKA.........................rvyP
403-442
F........EDDVEVTTGDRVAPGD.....VLADG..GKVK..SEIYGRVEVDLVRN..............................
452-494
....IDA..RMGAEAI..QELLKEL....dLEKLE..RELLeeMKHPSRARRAKARK..............................
1305-1340
LPKDARLLVKDGDYVEAGQPLTRGAidphqLLEAK..G.................................................
TT SS TT EE TT BSSSS xxxxxB SSxxEEEExxEEEEEEEEEEEEEEExxxxxxxxxxxxxxxxxxxxxxxxxxxxE
TTT S B TT xx SS xxxxxEEE SxxS EExx EEEETTEEEEEEExxxxxxxxxxxxxxxxxxxxxxxxxxxxS
E TT EE S TT EE TT EEEE xxxxxxxxxx xxTxxTxx SSEEEES ExxxxxxxxxxxxxxxxxxxxxxxxxxxxE
S TTxxEEE TT B EEESSTTT xxxxxB SSxxEEEExxEEEEEEEEExxxE ExxxxxxxxxxxxxxxxxxxxxxxxxxxxE
xxxxxxxxSS S TT EE TT xxxxx STTxxTS xx S EEEEEETTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxx B xx SHHHHxxHHHHHH xxxxx HHHHxxHHHHxxHHHHT SSHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SSS BS TT B TT BSBSS xxxxx HHHxxHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
831-841
GR..ETSVGRLKF
870-882
GRrlETSPGRILF
TExxE SHHHH
TSxx EEE HHHH
715-731
AFQPVLVEGQSIQLH.PL
735-751
AFNADF.DGDQMAVHvPL
753-769
SFAQAEARIQMLSAH.NL
EEEEEEESSS EEE xTT
TTT TxTT EEEEEx
HHHHHHHHHTSBTTTx
2-29
KKEVRKVRIALASPEK.IRSWSYGEV..EKP
796-826
RKEKKGAGMAFATPEEaLAAYERGEValNAP
EEEEEE HHHxHHHH S B xx S
STTTT EESSHHHxHHHHHHHTSxxS S
591-637
VTNPGSERPLRSltDILSgkqgRFRQNLLGKRVDYSGRSVIVVGPQL
1381-1421
VTDPGDSRLLEG..QVLE....KWDVEALNERLIAEGKVPVAWKPLL
B TT B xxHHHHxxxxHSSTTSTTTTTTSSEE SSEEEEEE
EE TTSS TTxx EExxxxHHHHHHHHHHHHHHT EEEEE
72-91
VCERC.GVEVtrSIVRRYRMG
1200-1218
VCQKCyGYDL..SMARPVSIG
B SSSx B xxS GGGGGT
B HHHxH EExxTTTTEE T
326-346
EEGDSvHLTLFLEwTE..PKDYK
1284-1304
EEGED.RLSVFVE.SEgfSKEYK
EETTExEE EEExEExxEEEEE
EE SSx EEEEEEx SxxS B
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Repeats regions & their secondary structure in the PDBID : 4xls_F

>4xls_F mol:protein length:347 RNA polymerase sigma factor SigA
31-53
EEGMEAIKKLSE.ATGLDQELIRE
190-209
....ETINKLSRtARQLQQELGRE
213-230
EEIAEAM......GPGWDAKRVEE
HHHHHHHHHHHTxTT HHHHHH
xxxxHHHHHHHHxHHHHHHHHSSS
HHHHHTTxxxxxx SS HHHHHH
75-113
PDPKTVEEVDGKLKS.LPKELKRYLHIAREGEAA....RQHLIE
258-301
PDENLPSPVEAAAQSlLSEELEKALSKLSEREAMvlklRKGLID
IIIIIHHHHHHTTSx HHHHHHHHHHHHHHHHxxxxHHHHHH
SS HHHHHHHHxHHHHHHHHHHTTS HHHHxxxxHHHHHH
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Repeats regions & their secondary structure in the PDBID : 4xls_G

>4xls_G mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
HHxHHHHHHHHxxHTTS
xEEEESS SxxSTT
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxHHTT EE Sxx TT EEEEExx SSx EE
ExES xTT EEEEB TxxT EEEEEE BxxSSExE G
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Repeats regions & their secondary structure in the PDBID : 4xls_H

>4xls_H mol:protein length:314 DNA-directed RNA polymerase subunit alpha
34-50
VTlGNPLRRIL..LSSIPG
53-70
VT.SVYIEDVLheFSTIPG
HHxHHHHHHHHxxHHH
EExEEEESS xxSSSS
76-112
VEiILNlKELVVRFLDP..KMASTTLILRAEG..PKEvRAG
120-157
VE.IMN.PDLHIATLEEggKLYMEVRVDRGVGyvPAE.RHG
HHxHHHxHHHH EEESxxSTT SEEEEEEEExx SSxEEE
EExES x S EEEEE TxxT EEEEEEEE BxxSSExE T
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Repeats regions & their secondary structure in the PDBID : 4xls_I

>4xls_I mol:protein length:1119 DNA-directed RNA polymerase subunit beta
110-287
ED.EVF...LGHlPL......MT.EDGSfI.........INGADRVI.VSQ.iHRSPGVYFTP....DPARPGRYIA.S.IIPL...PKRGPW..IDLEVEASG.....VVTMKVNK...RKFplVL.LLRV......LGYDQETLVRELSAYgDLVQGL..LDEA.VL.AMRPEEAMVRLFTLLRPGD......PPKKDKAL..AYLFG...LLadpkRYDLGEAGRYKAEEKLGV..G..LSG....
296-481
...GEFkdeVFL.PTLRY..LFAlTAGV.PghevddidhLGNR.RIRtV........GELMADqfrvGLAR....LARGvRERM...VMGSP...D..TLTPAK.....LVNSRPLEaalREF..FS.RSQL......SQFKDET..NPLSSL.RHKRRISALGPG.GLtRE.......RAGFDVR..D..VHRTHY.GRICPveTPEGAnigLI....TSL.AAYARVDALGFIRTPYRrvKNGVVTE
482-608
EV.VYM...TAS.EEDRYtiAQA.NTPL.E.........GDRIATDR.VVA..R.RRGEPVIV....APEEVE.FMDVSpKQVFslnTNLIPF....LEHDDA........NRALMG...SNM..QTqAVPL......IRAQAPVVMTGL.EE.RVVRD....SLA.AL.Y.AEEDGEV..................................................VK...............VDG
616-802
ED.GRL...VEH.PLRRY..ARS.NQGT.A.........FDQRPRVR.VGQ..RVKKGDLLAD....GPASEEGFLALG.QNVL...VAIMPF..DGYNFEDAI.....VISEELLK...RDF..YT.SIHI......ERYEIEARDTKLGPE.RITRDIPHLSEA.AL.RDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEP..SPEER...LL....RSIFGEKARDVKDTSLRVPPG..EGGIVVG
809-990
GDpGVE...LKP.GVREV..V.......................RVF.VAQkrKLQVGDKLAN....RHGN.KGVVA....KIL..pVEDMPHlpDGTPV.DVIlnplgVPSRMNLG...QIL..ET.HLGLagyflgQRYISPVFDGATEPE...IKEL..LAEAfNL.YFGKRQG.EGFGVDKREKEVL.ARAEKLGLVSPgkSPEEQ....L....KELF.DLGKVVLYDGRTGEPF..EGPIVVG
x EExxxEEEx xxxxxx x SSSx xxxxxxxxx EETTEEExEE xxEEEEE SEE xxxx EE SS TT xExEEEExxxE TTTxxS EEEE xxxxxTTSS EEExxxSSSxx ExEEHHxxxxxxHHTTTTT TGGGTTxTGGGSSxxS SGxGGx STTTSS HHHHHHHHHHxxxxxxHH TTS xx SHHHxxxHHxxxxHHHTTTT TTT HHHxxHxxHHHxxxx
xxxSSExxxEESxSHHHHxxHHHxHHHHxTxxxxxxxxxTT TxT x xxxxxxxx TT SxxxxTTEExxxxEE HxHHHHxxxHHHHHxxxHxxHHHHHHxxxxxHHHHTTTTxxxSS xxSSxS HxxxxxxHHH SHxxHHHHHHxHHHHHHSTTEEEx x SxxxxxxxSHHHHHHxxHxxHSEEESx STTSxx SSSxxx SxxxxSTTxTS TT TTTB SS S xxSSTTTTT
EExEEExxx HHxHHHHSxx EEx TTSx xxxxxxxxxBSSSBB SxSSExxExEESSS EExxxxEE SSSx EEExS GGxxxGGS TGxxxxGGG TTxxxxxxxxGGGS HxxxHHHxxHHxHHHHxxxxxxHHHB TT x SxEE S xxxxHHHxHHxHxHTT SB xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx SxxxxxxxxxxxxxxxSSE
TTxS ExxxEEExE SxxB xSSSBx xxxxxxxxxB B S xSS xxEE TT SB xxxx SSEETTEE SxEEEExxx BS xxTTSSTTT Bxxxxx THHHHxxxTTTxxT xEEEExxxxxxEEEEEEEEB SS B xEE S SS TTxTTxSSB SSSBB SS B TT EEE EEEE xx HHHHxxxHHxxxxHHHS SEEE EE TTxx BEEEE
TSxTT xxx xTTEEExxExxxxxxxxxxxxxxxxxxxxxxxEEExEEExxEEE SS xxxxEEETxTS xxxx B xxx SSxxSSEE xTTSxxxxx S B xxxTTHxxHHxHHT xxxxxx HHHHHHHHHHHHHHxxxH ExxEE xTTxS HHHxHHHHHHHHHHHHHxHHHHHTT xxHHHHHxxxxHxxxxHHHHxHHTTSS TT HHHHHxxHHHHHHT
16-51
PPLTeiQVESYKKALQADVPPEKRenvgIQAAFKET
76-105
PPFS..QDECREKDLTYQAPLYAR....LQLIHKDT
TTxxHHHHHHHHHTT SSS SSxxxxS SSTTH
SS xxHHHHHHTT EEEEExxxxE EEESSS
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Repeats regions & their secondary structure in the PDBID : 4xls_J

>4xls_J mol:protein length:1524 DNA-directed RNA polymerase subunit beta'
171-226
LPAGVDALVKDGEEVVKGQELAPGV.....VSRMD..GVAL..YRFPRRVRVDYLRKE......................raalriP
227-283
LSAWVEKEAYRPGEVL..AELSEPY.....LFRAEesGVVE..LKDLAEGHLIYLRQE.....................eevvaryF
284-354
LPAGMTPLVVEGEIVEVGQPLAEG..........K..G..L..LRLPRHMTAKEVEAEeegdsvhltlflewtepkdykvaphmnvI
355-402
VPEG..AKVQAGEKIVAAIDPEEEV.....IAEAE..GVVH..LHEPASILV...VKA.........................rvyP
403-442
F........EDDVEVTTGDRVAPGD.....VLADG..GKVK..SEIYGRVEVDLVRN..............................
452-494
....IDA..RMGAEAI..QELLKEL....dLEKLE..RELLeeMKHPSRARRAKARK..............................
1305-1340
LPKDARLLVKDGDYVEAGQPLTRGAidphqLLEAK..G.................................................
TT SS TT EE TT BSSTT xxxxxB S xxEEEExxEEEEEEEEEEE xxxxxxxxxxxxxxxxxxxxxxxxxxxx
xx xxxxx xx xx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxx xx xx xx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
S TTxxEEE TT EEEEESSTTT ExxxxxE SSSxxEEEExxEEEEEEEEExxxE xxxxxxxxxxxxxxxxxxxxxxxxxxxxE
xxxxxxxxSS SS TT EE TT xxxxx STTxxTS xx S EEEEEETTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxx B xx SHHHHxxHHHHHH xxxxx HHHHxxHHHHxxHHHHT SSHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SSS BS TT B TT BSBSS xxxxx HHHxxHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
831-841
GR..ETSVGRLKF
870-882
GRrlETSPGRILF
TExxE HHHHH
TSxx EEE HHHH
1144-1192
LYGRVLAR.EVEALGRRL.EEGRylsledvhflikaaeagevreVPVR.SPL
1390-1420
LEGQVLEKwDVEALNERLiAEGK.....................VPVAwKPL
HTT BBSSx EEETTEEEx TT xxxxxxxxxxxxxxxxxxxxxB HxHHH
TT EEHxHHHHHHHHHxHHHHxxxxxxxxxxxxxxxxxxxxxT x EE
750-783
PLSSFAQAEAR.....I.QMLSAHNLLSPASGEPLAKPSR
1019-1058
PLYVMAQSGARgnpqqIrQLCGMRGLMQKPSGETFEVPVR
SHHHHHHHHxxxxxHxTSBTTT B TTTSSBSS T
HHHHHHHHTSSxxxxx x HHHHHHHSS B TTSSB
2-29
KKEVRKVRIALASPEK.IRSWSYGEV..EKP
796-826
RKEKKGAGMAFATPEEaLAAYERGEValNAP
EEEEEE HHHxHHHH S B xx S
STTTT EESSHHHxHHHHHHHTSxxS S
935-950
KYYGFTLSTTSGITIG
1203-1218
KCYGYDLSMARPVSIG
HHHHHHHHHHH
HHH EETTTTEE TT
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Repeats regions & their secondary structure in the PDBID : 4xls_L

>4xls_L mol:protein length:347 RNA polymerase sigma factor SigA
31-53
EEGMEAIKKLSE.ATGLDQELIRE
190-209
....ETINKLSRtARQLQQELGRE
213-230
EEIAEAM......GPGWDAKRVEE
HHHHHHHHHHHTxTT HHHHHH
xxxxHHHHHHHHxHHHHHHHHSSS
HHHHHTTxxxxxx TT HHHHHH
75-113
PDPKTVEEVDGKLKS.LPKELKRYLHIAREGEAA....RQHLIE
258-301
PDENLPSPVEAAAQSlLSEELEKALSKLSEREAMvlklRKGLID
STTTTHHHHHHTTSx HHHHHHHHHHHHHHHHxxxxHHHHHH
SS HHHHHHHHxHHHHHHHHHHTTS HHHHxxxxHHHHHH
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