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Repeats regions & their secondary structure in the PDBID : 4yfk_F

>4yfk_F mol:protein length:613 RNA polymerase sigma factor RpoD
246-266
QEE.ILKLseVFKQFRLVPKQF
283-302
QERlIMKL..CVEQCKMPKKNF
HHHxHHHHxxHHHHTTEEE HH
HHHxHHHHxxTTTTSS STT
195-233
DEDEEDGDddsADDDNSIDPELAREKFAELRAqyvVTRD
514-546
DEDSHLGD...FIEDTTLELPLDSATTESLRA...ATHD
xxx HHHHHHHHHHxxxHHHH
SSS BGGGxxxG B S HHHHHHHHHHHHxxxHHHH
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Repeats regions & their secondary structure in the PDBID : 4yfk_L

>4yfk_L mol:protein length:613 RNA polymerase sigma factor RpoD
246-266
QEE.ILKLseVFKQFRLVPKQF
283-302
QERlIMKL..CVEQCKMPKKNF
HHHxHHHHxxHHHHHHEEE HH
HHHxHHHHxxHHHTTS STT
195-233
DEDEEDGDddsADDDNSIDPELAREKFAELRAqyvVTRD
514-546
DEDSHLGD...FIEDTTLELPLDSATTESLRA...ATHD
xxx HHHHHHHHHHxxxHHHH
SSS BGGGxxxG B SS HHHHHHHHHHHHxxxHHHH
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Repeats regions & their secondary structure in the PDBID : 4yfk_D

>4yfk_D mol:protein length:1407 DNA-directed RNA polymerase subunit beta'
982-1040
.................LKLIDEFGRTK..ESY...........................KVPYGAVLAKGDGEQVAGGETVANwdpHTMP..VITEVSGFVRFTDM
1042-1116
DGQTITRqtdeltglssLVVLDSAERTAggKDL...........................RPALKIVDAQGNDVLIPGTDMPAQ...YFLPgkAIVQLEDGVQIS..
1117-1189
SGDTLAR..........................ipqesggtkditgglprvadlfearrpKEP..AILAEISGIVSFGKETKGK...RRL...VITPVDGSDPYEEM
xxxxxxxxxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xx
xxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xx xx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx SHHHHHHHHxxxTT xxx SS B SSSEE
53-87
RDGLFCARIFGpvkdyecLCGK.YKRLKHRGVICEK
883-911
RSVVSCDTDFG.......VCAHcYGRDLARGHIINK
TTBSS TTTT xxxxxxx SSTxT SSSS TT
GGG SSSxxxxxxxB HHxHH SSSSS
11-27
QTKTEEFDAIKIALASP
94-110
QTKVRRERMGHIELASP
S EEEEE H
GGGGGT EEEEEEEEE
497-548
...................................................................EP.IIVPSQD.VVLGLYY.MTRDCVNAKGEGMVLtgPKEAERLYRSGLASLhARV
549-664
KVRITEYEKDANGELVAKTSLKDTTVGRAILWM.IVPKGLPYSIVNQALGKKAISKMLNtcyRILGLKPTVIFADQI.MYTGFAY.AARSGASVGIDDMVI..PEKKHEIISEAEAEV.AEI
1284-1395
RVKIANRELEANGKVGATYSRDLLGITKASLATeSFISAASFQETTRVLTEAAVAGKRD...ELRGLKENVIVGRLIpAGTGYAYhQDRMRRRAAGEAPAA..PQVTAE...DASASL.AE.
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSBxTT SHxHHHHHHHxHS SS TTTT EExxSSHHHHHHHHHTTSSx SS
EEEEEEEE BTTTB EEEEEEEEEEHHHHHHHTxTS TTS GGGGSS HHHHHHHHHxxxHHHHHH HHHHHHHHxHHHHHHHxHHHHHHTT GGGxxS TTHHHHHHHHHxHHH
HHHHHHHHTTS EE HHHHHH xS HHHHHHHS HHHHHHHHHHTT ExxxE SHHHHHHTTS x SSHHHHxHHHHHHHHHSS xx xxx x x
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Repeats regions & their secondary structure in the PDBID : 4yfk_J

>4yfk_J mol:protein length:1407 DNA-directed RNA polymerase subunit beta'
982-1040
.................LKLIDEFGRTK..ESY...........................KVPYGAVLAKGDGEQVAGGETVANwdpHTMP..VITEVSGFVRFTDM
1042-1116
DGQTITRqtdeltglssLVVLDSAERTAggKDL...........................RPALKIVDAQGNDVLIPGTDMPAQ...YFLPgkAIVQLEDGVQIS..
1117-1189
SGDTLAR..........................ipqesggtkditgglprvadlfearrpKEP..AILAEISGIVSFGKETKGK...RRL...VITPVDGSDPYEEM
xxxxxxxxxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xx
xxxxxxxxxx xx xxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xx xx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx HHHHHHHxxxTT xxx SS B SSSEE
53-87
RDGLFCARIFGpvkdyecLCGK.YKRLKHRGVICEK
883-911
RSVVSCDTDFG.......VCAHcYGRDLARGHIINK
TTBSS TTTT xxxxxxx SSTxT SS S TT
GGG SSSxxxxxxxB HHxHH SSSSS
11-27
QTKTEEFDAIKIALASP
94-110
QTKVRRERMGHIELASP
SEEEEE H
TTHHHH EEEEEEEEE
497-548
...................................................................EP.IIVPSQD.VVLGLYY.MTRDCVNAKGEGMVLtgPKEAERLYRSGLASLhARV
549-664
KVRITEYEKDANGELVAKTSLKDTTVGRAILWM.IVPKGLPYSIVNQALGKKAISKMLNtcyRILGLKPTVIFADQI.MYTGFAY.AARSGASVGIDDMVI..PEKKHEIISEAEAEV.AEI
1284-1395
RVKIANRELEANGKVGATYSRDLLGITKASLATeSFISAASFQETTRVLTEAAVAGKRD...ELRGLKENVIVGRLIpAGTGYAYhQDRMRRRAAGEAPAA..PQVTAE...DASASL.AE.
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSBxS SHxHHHHHHHxHS SS TTTT EExxSSHHHHHHHHHTTSSx SS
EEEEEEEE BTTTB EEEEEEEEEEHHHHHHHTxTS TT THHHHS HHHHHHHHHxxxHHHHHH HHHHHHHHxHHHHHHHxHHHHHHTT GGGxxS TTHHHHHHHHHxHHH
HHHHHTTSSSSSSS EEE HHHHHT xS HHHHHHHS HHHHHHHHHHHT ExxxE SHHHHHHTTS x SSHHHHxHHHHHHHHHS xx xxx x x
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Repeats regions & their secondary structure in the PDBID : 4yfk_C

>4yfk_C mol:protein length:1342 DNA-directed RNA polymerase subunit beta
877-965
VTGGDILVGKVTPKG.eTQLTPEEKLlraifgekasdvkdsslrvPNGVSGTVIDVqVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
1060-1129
IQPGDKMAGRHGNKGviSKINPIEDM...................PYDENGTPVDI.VLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
E TT EEE EEE xxS HHHHxxxxxxxxxxxxxxxxxxxHHHHHHT xSEEE EE TT EEEEEEEEEE TTS HH
TT EEEETTS EExxEEEEEE TTxxxxxxxxxxxxxxxxxxxTS B TT B xSEEE GGGTTSS B HHHHHHHHHHHHHHHHHH
86-160
QIRGVTYSAPLRVKLRLVIYEREAPE....GTVKDIKEQEVyMGEIPLMTDNGTFVinGTervivSQLHRspgvFFDSD
452-518
RIRSVGEMAENQFRVGLVRVERAVKErlslGDLDTLMPQDM.INAKPISAAVKEFF..GS.....SQLSQ....FMDQN
HHHT EEEEEEEEEEEEE SS SSxxxx EEEEE ExEEEEEE TTS ExxESxxxxxSSSEExxxxEE E
EEE HHHHHHHHHHHHHHHHHHHHHHxxxxHHHH SSS xTTTS SHHHHHHHxxHHxxxxxHHHSBxxxxTTEEE
176-214
IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIlRALN
241-278
LVPERLRGETASFDIEANGKVYVEKGRRITARHI.RQLE
EE SBS EEEE TT EEEETT EETTHHxHHHT
TTTTTTEE S EEETTEEEE TTSEE HHHHxHHHH
288-315
PVEYiaGKVVAkDYIDESTGELICAANM
776-800
PVER..GDVLA.DGPSTDLGELALGQNM
TTGxxGGT ExE S EE TTT EEE
EE TxxT EEExE TTEETTEE SSEEE
560-685
PIETP..EGPNIGLINSLSvyaqtnEYGFLETPYR.KVTDGvVTDEiHYLSAIEEGNYVIAQANSNLDEEGHF....VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL..EHDDAN.RALMGANM
1181-1308
PIATPvfDGAKEAEIKELL......KLGDLPTSGQiRLYDG.RTGE.QFERPVTVGYMYMLKLNHLVDDKMHArstgSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLtvKSDDVNgRTKMYKNI
SS xxSSSSSSSS BBxxxxxxTT EE TTS xEEEEExEEEExTTEEEEEEEEEEHHHHHHS B SS xxxx EETTTEESSSEEEEE SSSEEEEETTT EEES SSTTSBHxxHHHTSTxTGGGB HH
EE xxSTT HHHHHHxxxxxxHHHTTT TTxSEE xB TTxT B SS EEEEEEEEEEBS HHHHxxxx EEESS EEBSSS EE SSSS EE HHHHHHHHHTT HxxHHHHHHxTTTTTT H
325-356
LSQSGHK.RIETLFTNDLDHGPYISETLRVDPT
521-553
LSEITHKrRISALGPGGLTRERAGFEVRDVHPT
HHTTT xEEEEE SSSS THHHHHHHH
HHHHHHHxS B STTS TTT HHHHS G
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Repeats regions & their secondary structure in the PDBID : 4yfk_I

>4yfk_I mol:protein length:1342 DNA-directed RNA polymerase subunit beta
877-965
VTGGDILVGKVTPKG.eTQLTPEEKLlraifgekasdvkdsslrvPNGVSGTVIDVqVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
1060-1129
IQPGDKMAGRHGNKGviSKINPIEDM...................PYDENGTPVDI.VLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
E TT EEE EEE xx HHHHxxxxxxxxxxxxxxxxxxxHHHHHH xSEEE EE TT EEEEEEEEEE TTS HH
TT BEE TTS xxB EEE GGxxxxxxxxxxxxxxxxxxxGS B TT B xSEEE TTHHHHTTB HHHHHHHHHHHHHHHHHH
86-160
QIRGVTYSAPLRVKLRLVIYEREAPE....GTVKDIKEQEVyMGEIPLMTDNGTFVinGTervivSQLHRspgvFFDSD
452-518
RIRSVGEMAENQFRVGLVRVERAVKErlslGDLDTLMPQDM.INAKPISAAVKEFF..GS.....SQLSQ....FMDQN
HHHT EEEEEEEEEEEEE SS SSxxxx EEEEE ExEEEEEE TTS ExxESxxxxxSSSEExxxxEE EE
EEE HHHHHHHHHHHHHHHHHHHHHHxxxxHHHH SSS xTTTS SHHHHHHHxxHHxxxxxHHHS xxxxSSEEE
176-214
IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIlRALN
241-278
LVPERLRGETASFDIEANGKVYVEKGRRITARHI.RQLE
EE SBS EEEE TT EEEETT EETHHHxHHHT
TTTTTT B S EEETTEEEE TT B HHHHxHHHH
288-315
PVEYiaGKVVAkDYIDESTGELICAANM
776-800
PVER..GDVLA.DGPSTDLGELALGQNM
TTGxxGGT BxB S EE TTT EEE
EE TxxT EEExE TTEETTEE SSEEE
560-685
PIETP..EGPNIGLINSLSvyaqtnEYGFLETPYR.KVTDGvVTDEiHYLSAIEEGNYVIAQANSNLDEEGHF....VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL..EHDDAN.RALMGANM
1181-1308
PIATPvfDGAKEAEIKELL......KLGDLPTSGQiRLYDG.RTGE.QFERPVTVGYMYMLKLNHLVDDKMHArstgSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLtvKSDDVNgRTKMYKNI
SS xx SS SSSS BBxxxxxxSS EE TTS xEEEEExE xTTB EEEE HHHHHHS B SS xxxx EETTTEESSSEEEEE SSSEEEEETTT B BS SSTTSBTxxTGGG TxTGGGB HH
EE xxSSS HHHHHHxxxxxxHHHHHT SSxSEE xB TTxT B SS EEEEEEEEEEBS HHHHxxxx EEESS BBSSS B SSS EE HHHHHHHHHTT HxxHHHHHHxTTTTTT T
325-356
LSQSGHK.RIETLFTNDLDHGPYISETLRVDPT
521-553
LSEITHKrRISALGPGGLTRERAGFEVRDVHPT
HHTTT xEEEEE SSSS HHHHHHHT
HHHHHHHxS EES STTS TTT HHHHS G
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