A Simple Perl CGI
HOME

Repeats regions & their secondary structure in the PDBID : 4ylo_F

>4ylo_F mol:protein length:628 RNA polymerase sigma factor RpoD
261-281
QEE.ILKLseVFKQFRLVPKQF
298-317
QERlIMKL..CVEQCKMPKKNF
HHHxHHHHxxHHHHHTS HH
HHHxHHHHxxHHHHHS STT
210-248
DEDEEDGDddsADDDNSIDPELAREKFAELRAqyvVTRD
529-561
DEDSHLGD...FIEDTTLELPLDSATTESLRA...ATHD
xxx HHHHHHHHHHxxxHHHH
SS BGGGxxxG SSS HHHHHHHHHHHHxxxHHHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4ylo_L

>4ylo_L mol:protein length:628 RNA polymerase sigma factor RpoD
261-281
QEE.ILKLseVFKQFRLVPKQF
298-317
QERlIMKL..CVEQCKMPKKNF
HHHxHHHHxxHHHHHT HH
HHHxHHHHxxHHHHHT HHH
210-248
DEDEEDGDddsADDDNSIDPELAREKFAELRAqyvVTRD
529-561
DEDSHLGD...FIEDTTLELPLDSATTESLRA...ATHD
xxx HHHHHHHHHHxxxHHHH
STT BGGGxxxT B SS HHHHHHHHHHHHxxxHHHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4ylo_R

>4ylo_R mol:protein length:628 RNA polymerase sigma factor RpoD
261-281
QEE.ILKLseVFKQFRLVPKQF
298-317
QERlIMKL..CVEQCKMPKKNF
HHHxHHHHxxHHHHTT HH
HHHxHHHHxxHHHHHT HHH
210-248
DEDEEDGDddsADDDNSIDPELAREKFAELRAqyvVTRD
529-561
DEDSHLGD...FIEDTTLELPLDSATTESLRA...ATHD
xxx HHHHHHHHHHxxxHHHH
SSS BGGGxxxT B TTS HHHHHHHHHHHHxxxHHHH
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4ylo_D

>4ylo_D mol:protein length:1407 DNA-directed RNA polymerase subunit beta'
982-1040
.................LKLIDEFGRTK..ESY...........................KVPYGAVLAKGDGEQVAGGETVANwdpHTMP..VITEVSGFVRFTDM
1042-1116
DGQTITRqtdeltglssLVVLDSAERTAggKDL...........................RPALKIVDAQGNDVLIPGTDMPAQ...YFLPgkAIVQLEDGVQIS..
1117-1189
SGDTLAR..........................ipqesggtkditgglprvadlfearrpKEP..AILAEISGIVSFGKETKGK...RRL...VITPVDGSDPYEEM
xxxxxxxxxxxxxxxxx B TT xx xxxxxxxxxxxxxxxxxxxxxxxxxxxEE TT B S SS B TT B Bxxx SSxxSEEE SS S EEE
BTTTEE xxxxxxxxxx STTT ExxEE xxxxxxxxxxxxxxxxxxxxxxxxxxx TTT SSTTS EEEEB TTS xxxB B xxTTS B EE xx
TTS SEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxE xx THHHHHHHHHHHHxxxHT xxx SS B SSEE
53-87
RDGLFCARIFGpvkdyecLCGK.YKRLKHRGVICEK
883-911
RSVVSCDTDFG.......VCAHcYGRDLARGHIINK
TTSTT HHHH xxxxxxx SBTxTB SSSSS STT
TTT TTExxxxxxxEEHHxHH B TTTSSB
11-27
QTKTEEFDAIKIALASP
94-110
QTKVRRERMGHIELASP
EEEEEEEE H
GGGGGT EEEEEEEEE
497-548
...................................................................EP.IIVPSQD.VVLGLYY.MTRDCVNAKGEGMVLtgPKEAERLYRSGLASLhARV
549-664
KVRITEYEKDANGELVAKTSLKDTTVGRAILWM.IVPKGLPYSIVNQALGKKAISKMLNtcyRILGLKPTVIFADQI.MYTGFAY.AARSGASVGIDDMVI..PEKKHEIISEAEAEV.AEI
1284-1395
RVKIANRELEANGKVGATYSRDLLGITKASLATeSFISAASFQETTRVLTEAAVAGKRD...ELRGLKENVIVGRLIpAGTGYAYhQDRMRRRAAGEAPAA..PQVTAE...DASASL.AE.
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSBxSS HHxHHHHHHHxHH SS TTTTEEExxSSHHHHHHHHHHTSSx TT
EEEEEEEEE TTS EEEEEEEEEEEHHHHHHHHxHS SSS GGGTTS HHHHHHHHHxxxHHHHHH HHHHHHHHxHHHHHHHxHHHHHHHT GGGxxS TTHHHHHHHHHxHHH
HHHHHHHHHHHH S EEEE THHHHHHSxS HHHHHHHS HHHHHHHHHHHT ExxxE SHHHHHHHT x SSHHHHxHHHHHHHHHHH xx xxx x x
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4ylo_J

>4ylo_J mol:protein length:1407 DNA-directed RNA polymerase subunit beta'
982-1040
.................LKLIDEFGRTK..ESY...........................KVPYGAVLAKGDGEQVAGGETVANwdpHTMP..VITEVSGFVRFTDM
1042-1116
DGQTITRqtdeltglssLVVLDSAERTAggKDL...........................RPALKIVDAQGNDVLIPGTDMPAQ...YFLPgkAIVQLEDGVQIS..
1117-1189
SGDTLAR..........................ipqesggtkditgglprvadlfearrpKEP..AILAEISGIVSFGKETKGK...RRL...VITPVDGSDPYEEM
xxxxxxxxxxxxxxxxx B TT xx xxxxxxxxxxxxxxxxxxxxxxxxxxxB TT EESS TT B TTEEEEExxx SSxx EEE SS S EEE
BTTTEE xxxxxxxxxx STT ExxEE xxxxxxxxxxxxxxxxxxxxxxxxxxx GGGS STTSS EEEEB SSSSxxxB B xxTTS B B xx
TT EEEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx HHHHHHHHHHHHHxxxHT xxx SS B SS EE
53-87
RDGLFCARIFGpvkdyecLCGK.YKRLKHRGVICEK
883-911
RSVVSCDTDFG.......VCAHcYGRDLARGHIINK
TTSTT HHHH xxxxxxx SSTxT SSSSS STT
TTT TTSxxxxxxxEEHHxHH B TTTSSB
11-27
QTKTEEFDAIKIALASP
94-110
QTKVRRERMGHIELASP
EEEEEE H
GGGGGT EEEEEEEEE
497-548
...................................................................EP.IIVPSQD.VVLGLYY.MTRDCVNAKGEGMVLtgPKEAERLYRSGLASLhARV
549-664
KVRITEYEKDANGELVAKTSLKDTTVGRAILWM.IVPKGLPYSIVNQALGKKAISKMLNtcyRILGLKPTVIFADQI.MYTGFAY.AARSGASVGIDDMVI..PEKKHEIISEAEAEV.AEI
1284-1395
RVKIANRELEANGKVGATYSRDLLGITKASLATeSFISAASFQETTRVLTEAAVAGKRD...ELRGLKENVIVGRLIpAGTGYAYhQDRMRRRAAGEAPAA..PQVTAE...DASASL.AE.
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSBx S HHxHHHHHHHxHH SS TTTT EExxSSHHHHHHHHHTTSSx TT
EEEEEEEEE SSS EEEEEEEEEEEHHHHHHHHxHS TTS GGGTTS HHHHHHHHHxxxHHHHHH HHHHHHHHxHHHHHHHxHHHHHHHT GGGxxS TTHHHHHHHHHxHHH
HHHHHHHHHHHH EEEE HHHHHHHSxS HHHHHHHS HHHHHHHHHHHT ExxxE SHHHHHHHT x SSTHHHxHHHHHHHHHHT xx xxx x x
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4ylo_P

>4ylo_P mol:protein length:1407 DNA-directed RNA polymerase subunit beta'
982-1040
.................LKLIDEFGRTK..ESY...........................KVPYGAVLAKGDGEQVAGGETVANwdpHTMP..VITEVSGFVRFTDM
1042-1116
DGQTITRqtdeltglssLVVLDSAERTAggKDL...........................RPALKIVDAQGNDVLIPGTDMPAQ...YFLPgkAIVQLEDGVQIS..
1117-1189
SGDTLAR..........................ipqesggtkditgglprvadlfearrpKEP..AILAEISGIVSFGKETKGK...RRL...VITPVDGSDPYEEM
xxxxxxxxxxxxxxxxxEEEE TTS B xx ExxxxxxxxxxxxxxxxxxxxxxxxxxxE TT EESS SS TT EEEExxx SSxx EEEE SS EEEEE
BTTTEE xxxxxxxxxx STTT ExxEE xxxxxxxxxxxxxxxxxxxxxxxxxxx GGG STTSS EEEEB SSS xxxB B xxTT SBSB xx
TT EEEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxE xx SSTTHHHHHHHHHxxxHT xxx SS SSEE
53-87
RDGLFCARIFGpvkdyecLCGK.YKRLKHRGVICEK
883-911
RSVVSCDTDFG.......VCAHcYGRDLARGHIINK
TTSTT HHHH xxxxxxx SSTxT SS S STTS
TTT TTSxxxxxxxEEHHxHH B TTTSSB
11-27
QTKTEEFDAIKIALASP
94-110
QTKVRRERMGHIELASP
EEEEEEEE H
GGGGGT EEEEEEEEE
497-548
...................................................................EP.IIVPSQD.VVLGLYY.MTRDCVNAKGEGMVLtgPKEAERLYRSGLASLhARV
549-664
KVRITEYEKDANGELVAKTSLKDTTVGRAILWM.IVPKGLPYSIVNQALGKKAISKMLNtcyRILGLKPTVIFADQI.MYTGFAY.AARSGASVGIDDMVI..PEKKHEIISEAEAEV.AEI
1284-1395
RVKIANRELEANGKVGATYSRDLLGITKASLATeSFISAASFQETTRVLTEAAVAGKRD...ELRGLKENVIVGRLIpAGTGYAYhQDRMRRRAAGEAPAA..PQVTAE...DASASL.AE.
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSBx S HHxHHHHHHHxHH BSS TTTTEEExxSSHHHHHHHHHHTSSx TT
EEEEEEEEE TTS EEEEEEEEEEEHHHHHHHHxHS TTS GGGTTS HHHHHHHHHxxxHHHHHH HHHHHHHHxHHHHHHHxHHHHHHHT GGGxxS TTHHHHHHHHHxHHH
HHHHHHHHHHHH S EEEE HHHHHHTSxS HHHHHHHS HHHHHHHHHHHT ExxxE SHHHHHHHTS x SSGGGHxHHHHHHHHHTTT xx xxx x x
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4ylo_I

>4ylo_I mol:protein length:1342 DNA-directed RNA polymerase subunit beta
877-965
VTGGDILVGKVTPKG.eTQLTPEEKLlraifgekasdvkdsslrvPNGVSGTVIDVqVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
1060-1129
IQPGDKMAGRHGNKGviSKINPIEDM...................PYDENGTPVDI.VLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
E TT EEE EEE xx HHHHxxxxxxxxxxxxxxxxxxxHHHHHHT xSEEE EE TT EEEEEEEEEE TTS HH
TT EEEETTS EExxEEEEEE TTxxxxxxxxxxxxxxxxxxxTS B TTS B xSEEE GGGSTTTTB HHHHHHHHHHHHHHHHHH
86-160
QIRGVTYSAPLRVKLRLVIYEREAPE....GTVKDIKEQEVyMGEIPLMTDNGTFVinGTervivSQLHRspgvFFDSD
452-518
RIRSVGEMAENQFRVGLVRVERAVKErlslGDLDTLMPQDM.INAKPISAAVKEFF..GS.....SQLSQ....FMDQN
HHHT EEEEEEEEEEEE SSSTTxxxx SEEEEEEExEEEEEE B TTS ExxEExxxxxTTEEExxxxEE EE
EEE SHHHHHHHHHHHHHHHHHHHHHxxxxHHHHS TTT xHHHH HHHHHHHxxHHxxxxxHHHHSxxxxSSEEE
176-214
IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIlRALN
241-278
LVPERLRGETASFDIEANGKVYVEKGRRITARHI.RQLE
EE SBS EEEEE TTS EEEEETT SEEETHHHxHHHT
HHHHSS SS EE SSSEEE SSS HHHHxHHHH
288-315
PVEYiaGKVVAkDYIDESTGELICAANM
776-800
PVER..GDVLA.DGPSTDLGELALGQNM
HHHxxHTTSBxB S B TTTSSBSS
EEETxxT EEExE TTB SSSB SEEE
560-685
PIETP..EGPNIGLINSLSvyaqtnEYGFLETPYR.KVTDGvVTDEiHYLSAIEEGNYVIAQANSNLDEEGHF....VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL..EHDDAN.RALMGANM
1181-1308
PIATPvfDGAKEAEIKELL......KLGDLPTSGQiRLYDG.RTGE.QFERPVTVGYMYMLKLNHLVDDKMHArstgSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLtvKSDDVNgRTKMYKNI
TT xxSSTTTTTEEEB xxxxxxTT EE TTS xEEEEExEEEExTTEEEEEEEEEEHHHHTTS EE TT xxxx B TTSSBSSSEEEEEETTEEEEEEGGG EEES GGGGS HxxHHHH TxTGGGB HH
EE xxSSS HHHHHHxxxxxxHHHHTT TTxSEE xB TTxT B SS EEEEEEEEEEBS HHHHxxxx EEESS BBTTT SB STGGGT EE HHHHHHHHHTT HxxHHHHHHxHTTTTT H
325-356
LSQSGHK.RIETLFTNDLDHGPYISETLRVDPT
521-553
LSEITHKrRISALGPGGLTRERAGFEVRDVHPT
HHHHT xEEEEE BTTB HHHHHHHH
HHHHHHHxTEEES STTS TTT SHHHHS G
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4ylo_C

>4ylo_C mol:protein length:1342 DNA-directed RNA polymerase subunit beta
877-965
VTGGDILVGKVTPKG.eTQLTPEEKLlraifgekasdvkdsslrvPNGVSGTVIDVqVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
1060-1129
IQPGDKMAGRHGNKGviSKINPIEDM...................PYDENGTPVDI.VLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
E TT EEE EEE xx HHHHxxxxxxxxxxxxxxxxxxxHHHHHH xSEEE EE TT EEEEEEEEE SSS HH
TT EEEETTS EExxEEEEEE TTxxxxxxxxxxxxxxxxxxxTS B TT B xSEEE GGGSTTTTB HHHHHHHHHHHHHHHHHH
86-160
QIRGVTYSAPLRVKLRLVIYEREAPE....GTVKDIKEQEVyMGEIPLMTDNGTFVinGTervivSQLHRspgvFFDSD
452-518
RIRSVGEMAENQFRVGLVRVERAVKErlslGDLDTLMPQDM.INAKPISAAVKEFF..GS.....SQLSQ....FMDQN
HHHT EEEEEEEEEEEE SSSTTxxxx SEEEEEEExEEEEEE B TTS ExxEExxxxxTTEEExxxxEE EE
EEE HHHHHHHHHHHHHHHHHHHHHHxxxxHTTSS TTT xHHHH HHHHHHHxxHHxxxxxHHHH xxxxSSEEE
176-214
IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIlRALN
241-278
LVPERLRGETASFDIEANGKVYVEKGRRITARHI.RQLE
EE SBS EEEEE TTS EEEEETTS EEEHHHHxHHHT
GGGSTT S B SSSB S SSS HHHHxHHHH
288-315
PVEYiaGKVVAkDYIDESTGELICAANM
776-800
PVER..GDVLA.DGPSTDLGELALGQNM
STTxxTTT Bx S TTT
EEETxxT EEExE TTBSSSSB SEEE
560-685
PIETP..EGPNIGLINSLSvyaqtnEYGFLETPYR.KVTDGvVTDEiHYLSAIEEGNYVIAQANSNLDEEGHF....VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL..EHDDAN.RALMGANM
1181-1308
PIATPvfDGAKEAEIKELL......KLGDLPTSGQiRLYDG.RTGE.QFERPVTVGYMYMLKLNHLVDDKMHArstgSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLtvKSDDVNgRTKMYKNI
TT xxSGGGTTTEEEE xxxxxxTT EE TTS xEEEEExEEEExTTEEEEEEEEE HHHHHHS EE TTSxxxx B TTSSBS SEEEEEETTEEEEEETTT EEES GGGGS HxxHHHH TxTGGGB HH
EE xxTTSS HHHHHHxxxxxxHHHHTT TTxSEE xB TTxT B SS EEEEEEEEEEBS HHHHxxxx EEESS B SSS B STGGGT EE HHHHHHHHHTT HxxHHHHHHxHIIIII H
325-356
LSQSGHK.RIETLFTNDLDHGPYISETLRVDPT
521-553
LSEITHKrRISALGPGGLTRERAGFEVRDVHPT
HHHTT xEE EE BTTB SHHHHHHHH
HHHHHHHxTEEES STTS STT HHHHS G
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 4ylo_O

>4ylo_O mol:protein length:1342 DNA-directed RNA polymerase subunit beta
877-965
VTGGDILVGKVTPKG.eTQLTPEEKLlraifgekasdvkdsslrvPNGVSGTVIDVqVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
1060-1129
IQPGDKMAGRHGNKGviSKINPIEDM...................PYDENGTPVDI.VLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
E TT EEE EEE xx HHHHxxxxxxxxxxxxxxxxxxxHHHHHHT xSEEE EE TT EEEEEEEEEE SSS HH
TT EEEETTS EExxEEEEEE TTxxxxxxxxxxxxxxxxxxxTS B SS B xSEEE GGGSTTTTB HHHHHHHHHHHHHHHHHH
86-160
QIRGVTYSAPLRVKLRLVIYEREAPE....GTVKDIKEQEVyMGEIPLMTDNGTFVinGTervivSQLHRspgvFFDSD
452-518
RIRSVGEMAENQFRVGLVRVERAVKErlslGDLDTLMPQDM.INAKPISAAVKEFF..GS.....SQLSQ....FMDQN
HHHT EEEEEEEEEEEE SSSTTxxxx SEEEEEEExEEEEEE TTS ExxEExxxxxTTEEExxxxEE EE
EEE HHHHHHHHHHHHHHHHHHHHHHxxxxHHHHS TTT xHHHH HHHHHHHxxHHxxxxxHHHH xxxxSSEEE
176-214
IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIlRALN
241-278
LVPERLRGETASFDIEANGKVYVEKGRRITARHI.RQLE
EE SBS EEEEE TTS EEEEETT SEEETHHHxHHHT
HHHHSS SS B SSSB S TT HHHHxHHHH
288-315
PVEYiaGKVVAkDYIDESTGELICAANM
776-800
PVER..GDVLA.DGPSTDLGELALGQNM
HHHxxHTT BxB S EE TTT EEE
EEETxxT EEExE TTB SSSB SSEEE
560-685
PIETP..EGPNIGLINSLSvyaqtnEYGFLETPYR.KVTDGvVTDEiHYLSAIEEGNYVIAQANSNLDEEGHF....VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL..EHDDAN.RALMGANM
1181-1308
PIATPvfDGAKEAEIKELL......KLGDLPTSGQiRLYDG.RTGE.QFERPVTVGYMYMLKLNHLVDDKMHArstgSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLtvKSDDVNgRTKMYKNI
TT xxSSTTTTTEEEE xxxxxxTT EE TTS xEEEEExEEEExTTEEEEEEEEE HHHHTTS EE TTSxxxx B TTS BSSSEEEEEETTEEEEEEGGG EEES GGGGS HxxHHHH TxTGGGB HH
EE xxTTSS HHHHHHxxxxxxHHHHTT TTxSEE xB TTxT B SS EEEEEEEEEEBS HHHHxxxx EEESS BBTTT SB TGGGT EEE HHHHHHHHHTT HxxHHHHHHxHIIIII H
325-356
LSQSGHK.RIETLFTNDLDHGPYISETLRVDPT
521-553
LSEITHKrRISALGPGGLTRERAGFEVRDVHPT
HHHHT Sx B BTTB SHHHHHHHH
HHHHHHHxTEEES STTS SSS HHHHS G
PDB View PDBsum View Pfam View