A Simple Perl CGI
HOME

Repeats regions & their secondary structure in the PDBID : 5cus_L

>5cus_L mol:protein length:216 Fab LC region of KTN3379
7-39
..................PP..SASGT.PGQRVTIS.CSGSLSNIGLNY..VSWY.QQ..
46-97
KLLISrnnQRPSGV....PD..RFSGSKSGTSASLA.ISGLRSEDEADYYCAAWD.DSPP
106-158
KLTVL...GQPKAA....PSvtLFPPSSEELQANKAtLVCLISDFYPGAVTVAWKaDSSP
160-197
..........KAGVetttPS..KQSNNKYAASSYLS.LTPEQWKSHRSYSC.........
xxxxxxxxxxxxxxxxxx SxxEEEE xTT EEEExEE TTTGGGS xxEEEExEExx
EEEEBxxxTTTB xxxxTTxx TTEEEEE SSEExEEEESS TT SEEEEExEEET
EEEE xxx S B xxxx ExxEEEE HHHHTTTx EEEEEEEEBSS B x
xxxxxxxxxx xxxx Bxx EE TTSSEEEExEEE HHHHSS xxxxxxxxx
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_M

>5cus_M mol:protein length:216 Fab LC region of KTN3379
7-39
..................PP..SASGT.PGQRVTIS.CSGSLSNIGLNY..VSWY.QQ..
46-97
KLLISrnnQRPSGV....PD..RFSGSKSGTSASLA.ISGLRSEDEADYYCAAWD.DSPP
106-158
KLTVL...GQPKAA....PSvtLFPPSSEELQANKAtLVCLISDFYPGAVTVAWKaDSSP
160-197
..........KAGVetttPS..KQSNNKYAASSYLS.LTPEQWKSHRSYSC.........
xxxxxxxxxxxxxxxxxx SxxEEEE xTT EEEEExEE TTTTTTS xxEEEExEExx
EEEEBxxxTTTB xxxxTTxx TTEEEEE SSEExEEEEES GGG SEEEEExEEET
EEEE xxx S B xxxx xx EE S x EEEEEEBSS B x EES
xxxxxxxxxx S xxxx xx EE TTS EEEExE TTTTTTSSxxxxxxxxx
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_N

>5cus_N mol:protein length:216 Fab LC region of KTN3379
7-39
..................PP..SASGT.PGQRVTIS.CSGSLSNIGLNY..VSWY.QQ..
46-97
KLLISrnnQRPSGV....PD..RFSGSKSGTSASLA.ISGLRSEDEADYYCAAWD.DSPP
106-158
KLTVL...GQPKAA....PSvtLFPPSSEELQANKAtLVCLISDFYPGAVTVAWKaDSSP
160-197
..........KAGVetttPS..KQSNNKYAASSYLS.LTPEQWKSHRSYSC.........
xxxxxxxxxxxxxxxxxx SxxEEEE xTT EEEEExEE TTTTTTS xxEEEExEExx
EEEEBxxxTTTB xxxxTTxxS TTEEEEEETTEExEEEEES GGG SEEEEExEEET
EEEE xxx S xxxx xx B x EEE S ExEEBS
xxxxxxxxxx S xxxxEExx S ExEE xxxxxxxxx
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_O

>5cus_O mol:protein length:216 Fab LC region of KTN3379
7-39
..................PP..SASGT.PGQRVTIS.CSGSLSNIGLNY..VSWY.QQ..
46-97
KLLISrnnQRPSGV....PD..RFSGSKSGTSASLA.ISGLRSEDEADYYCAAWD.DSPP
106-158
KLTVL...GQPKAA....PSvtLFPPSSEELQANKAtLVCLISDFYPGAVTVAWKaDSSP
160-197
..........KAGVetttPS..KQSNNKYAASSYLS.LTPEQWKSHRSYSC.........
xxxxxxxxxxxxxxxxxx SxxEEEE xTT EEEEExEE TTTTTTS xxEEEExEExx
EEEEBxxxTTTB xxxxTTxxS TTEEEEEETTEExEEEEES GGG SEEEEExEEET
EEEE xxx S xxxx xx EEE TTTT x EEE SBSSS xEEE
xxxxxxxxxx SSBxxxx xx TTS B xB B HHHH xxxxxxxxx
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_H

>5cus_H mol:protein length:221 IgG H chain
103-128
DAFDiwgQGTMVTVSS.ASTKGPSVFP
149-172
DYFP...EPVTVSWNSgALTSGVHTFP
S EExxxE EEExE S B E
EEBSxxxS EEES x EE
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_I

>5cus_I mol:protein length:221 IgG H chain
103-128
DAFDiwgQGTMVTVSS.ASTKGPSVFP
149-172
DYFP...EPVTVSWNSgALTSGVHTFP
S EExxxE EEExE E
EE SxxxS x TT
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_J

>5cus_J mol:protein length:221 IgG H chain
103-128
DAFDiwgQGTMVTVSS.ASTKGPSVFP
149-172
DYFP...EPVTVSWNSgALTSGVHTFP
G EExxxE EEExE B
SBBSxxxS EE x B
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_K

>5cus_K mol:protein length:221 IgG H chain
103-128
DAFDiwgQGTMVTVSS.ASTKGPSVFP
149-172
DYFP...EPVTVSWNSgALTSGVHTFP
S EExxxE EEExE
EE SxxxS EES x EEE
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_A

>5cus_A mol:protein length:627 Receptor tyrosine-protein kinase erbB-3
164-189
.CPPchevCKGRCWGP..........GSED...CQTLTKT
190-207
ICAP...qCNGHCFGP............NP...NQC....
208-233
.CHD...eCAGGCSGP..........QDTDcfaCRHFNDS
235-264
ACVP.......RCPQPlvynkltfqlEPNP...HTKYQYG
485-507
.CS......SGGCWGP..........GPGQclsCRNYSRG
x xxxx TTTTT xxxxxxxxxxBSSSxxxSTT B
TxxxxTSSS BSSxxxxxxxxxxxxSSxxxGGGxxxx
x TxxxxTBSS BSSxxxxxxxxxxSSTTxxx BSSBSS
SxxxxxxxS SxxxxxxxxxxEEEExxxTTTTEEE
xB xxxxxxSS BSSSxxxxxxxxxxSGGGxxxBSSBSSE
74-105
EFSTlpLPNLRVVRGTQVYDGKFAIFVMLNYN
389-418
NFSV..FSNLTTIGGRSLYNRGFSLLIMKNLN
SBxx TT EE SS BTTTEEEEEE
S GGxxGTT EE SS BTTTEEEEEES TT
10-160
CPGTLNGlsvTGDAeNQYQTL....YKLYERCEVVMGNLEIVLTGHNAD............LSFLQWIREVTGYVLVA.....MNefstlplpnlrvvrgtqvydgkfaifvmlnyntnSSHALRQLRltqltEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAE.IVVKDN
308-468
CPKACEG...TGSG.SRFQTVdssnIDGFVNCTKILGNLDFLITGLNGDpwhkipaldpekLNVFRTVREITGYLNIQswpphMH...nfsvfsnlttiggrslynrgfsllimknlnvTSLGFRSLK.....EISAGRIYISANRQLCYHHSLNWTKVLRGPTEErLDIKHN
EE xxx x xxxx SEEES EEEES xxxxxxxxxxxxS GGGGSS EESS xxxxxEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEES SB xxxxx TT EE SS BTTTEEEEEE S SSSS x B
EEE xxxBSTTxSSBSS xxxx TTTGGGGTT EEESBEEE HHHxxxxxxxxxxxxHH TTSSS GGGGxxxxxGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGG EESSxxxxx EEES TT S GGGTT EE SS BTTTExEEEEES
514-537
.......CNFL....NGEP.REFAH..EAECFSCHPEC
539-570
PmEGtatCNGS....GSDTcAQCAH..FRDGPHCVSSC
571-598
P.HG.......vlgaKGPI.YKYP.dvQNECRPCHENC
xxxxxxx SSSxxxxSSSSx EEESxxSSBEEE SS
x SxxxSS SxxxxBSSSxSTTSBxxSS SS TTS
xSSxxxxxxxxxxxEE SxSSEExxx SSS
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_B

>5cus_B mol:protein length:627 Receptor tyrosine-protein kinase erbB-3
164-189
.CPPchevCKGRCWGP..........GSED...CQTLTKT
190-207
ICAP...qCNGHCFGP............NP...NQC....
208-233
.CHD...eCAGGCSGP..........QDTDcfaCRHFNDS
235-264
ACVP.......RCPQPlvynkltfqlEPNP...HTKYQYG
485-507
.CS......SGGCWGP..........GPGQclsCRNYSRG
x xxxx TTTTT xxxxxxxxxxBSSSxxxSTT B
TxxxxTSSS BSSxxxxxxxxxxxxSSxxxSS xxxx
x TxxxxTBSS BSSxxxxxxxxxxSSGGxxxGBSSBSS
EEESxxxxxxxS xxxxxxxxxx xxx TTS
xB xxxxxxTT BSSSxxxxxxxxxxSTTSxxxBSSBSSE
74-105
EFSTlpLPNLRVVRGTQVYDGKFAIFVMLNYN
389-418
NFSV..FSNLTTIGGRSLYNRGFSLLIMKNLN
SExxEE SS EE SS BTTTEEEEEE
SBGGxxGTT EE SS BTTTEEEEEE TT
10-160
CPGTLNGlsvTGDAeNQYQTL....YKLYERCEVVMGNLEIVLTGHNAD............LSFLQWIREVTGYVLVA.....MNefstlplpnlrvvrgtqvydgkfaifvmlnyntnSSHALRQLRltqltEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAE.IVVKDN
308-468
CPKACEG...TGSG.SRFQTVdssnIDGFVNCTKILGNLDFLITGLNGDpwhkipaldpekLNVFRTVREITGYLNIQswpphMH...nfsvfsnlttiggrslynrgfsllimknlnvTSLGFRSLK.....EISAGRIYISANRQLCYHHSLNWTKVLRGPTEErLDIKHN
EE xxx x xxxx EEES EE S xxxxxxxxxxxxSS GGGSS EESS xxxxxEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx S SEExxxxxE SS EE SS BTTTEEEEEE x EEE
EEE xxxBSTTxSSBSS xxxx TTTGGG TT EEESBEEE HHHxxxxxxxxxxxxHS TTS S GGGGxxxxxGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGG EESSxxxxx EEES TT SBGGGTT EE SS BTTTExEEEEE
514-537
.......CNFL....NGEP.REFAH..EAECFSCHPEC
539-570
PmEGtatCNGS....GSDTcAQCAH..FRDGPHCVSSC
571-598
P.HG.......vlgaKGPI.YKYP.dvQNECRPCHENC
xxxxxxx SSSxxxxSSSSx EEEExxTTEEEE SS
x TxxxTS SxxxxBSSSxSGGGBxxS SS BTTB
x xxxxxxxxxxx x xxx
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_C

>5cus_C mol:protein length:627 Receptor tyrosine-protein kinase erbB-3
164-189
.CPPchevCKGRCWGP..........GSED...CQTLTKT
190-207
ICAP...qCNGHCFGP............NP...NQC....
208-233
.CHD...eCAGGCSGP..........QDTDcfaCRHFNDS
235-264
ACVP.......RCPQPlvynkltfqlEPNP...HTKYQYG
485-507
.CS......SGGCWGP..........GPGQclsCRNYSRG
x xxxx GGG xxxxxxxxxx SSxxxSTT
SxxxxSSTT xxxxxxxxxxxx xxx xxxx
x Sxxxx SSS SSxxxxxxxxxxSSTTxxxS SS SS
B SxxxxxxxS Sxxxxxxxxxx xxxSSS S
xB xxxxxxTT BSSSxxxxxxxxxxSTTSxxxBSSBSSE
74-105
EFSTlpLPNLRVVRGTQVYDGKFAIFVMLNYN
389-418
NFSV..FSNLTTIGGRSLYNRGFSLLIMKNLN
SExxEE TT EE SS BTTTEEEEEE
S GGxxGTT EE SS BTTTEEEEEE TT
10-160
CPGTLNGlsvTGDAeNQYQTL....YKLYERCEVVMGNLEIVLTGHNAD............LSFLQWIREVTGYVLVA.....MNefstlplpnlrvvrgtqvydgkfaifvmlnyntnSSHALRQLRltqltEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAE.IVVKDN
308-468
CPKACEG...TGSG.SRFQTVdssnIDGFVNCTKILGNLDFLITGLNGDpwhkipaldpekLNVFRTVREITGYLNIQswpphMH...nfsvfsnlttiggrslynrgfsllimknlnvTSLGFRSLK.....EISAGRIYISANRQLCYHHSLNWTKVLRGPTEErLDIKHN
E xxx x xxxx SEE S EEE S xxxxxxxxxxxxTT GGGGG EESS xxxxxEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxE S SEExxxxxE TT EE SS BTTTEEEEEE B Bx EEE
EEE xxxBSTTxSS SS xxxx TTTSSSSTT EEESBEEE HHHxxxxxxxxxxxxHH TTS S GGGGxxxxxGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGG EESSxxxxx EEES TT S GGGTT EE SS BTTTExEEEEE
514-537
.......CNFL....NGEP.REFAH..EAECFSCHPEC
539-570
PmEGtatCNGS....GSDTcAQCAH..FRDGPHCVSSC
571-598
P.HG.......vlgaKGPI.YKYP.dvQNECRPCHENC
xxxxxxx SSSxxxxSSSSx EEESxxSS EEE TTB
x SxxxSS xxxxBSSSxSSTTBxxSSBSS SSS
x xxxxxxxxxxx TxTTT xxx
PDB View PDBsum View Pfam View

Repeats regions & their secondary structure in the PDBID : 5cus_D

>5cus_D mol:protein length:627 Receptor tyrosine-protein kinase erbB-3
164-189
.CPPchevCKGRCWGP..........GSED...CQTLTKT
190-207
ICAP...qCNGHCFGP............NP...NQC....
208-233
.CHD...eCAGGCSGP..........QDTDcfaCRHFNDS
235-264
ACVP.......RCPQPlvynkltfqlEPNP...HTKYQYG
485-507
.CS......SGGCWGP..........GPGQclsCRNYSRG
x xxxx TTT xxxxxxxxxx SSxxxTTT
xxxx xxxxxxxxxxxx xxx xxxx
x xxxx BSS BSSxxxxxxxxxxSTTTxxxSBSSBSS
EEESxxxxxxxS SxxxxxxxxxxEEE xxxS EE
xB xxxxxxTT BSSSxxxxxxxxxxSTTSxxxBSSBSSE
74-105
EFSTlpLPNLRVVRGTQVYDGKFAIFVMLNYN
389-418
NFSV..FSNLTTIGGRSLYNRGFSLLIMKNLN
xxEE SS EE SS BTTTEEEEE
S GGxxGTT EE SS BTTTEEEEEES TT
10-160
CPGTLNGlsvTGDAeNQYQTL....YKLYERCEVVMGNLEIVLTGHNAD............LSFLQWIREVTGYVLVA.....MNefstlplpnlrvvrgtqvydgkfaifvmlnyntnSSHALRQLRltqltEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAE.IVVKDN
308-468
CPKACEG...TGSG.SRFQTVdssnIDGFVNCTKILGNLDFLITGLNGDpwhkipaldpekLNVFRTVREITGYLNIQswpphMH...nfsvfsnlttiggrslynrgfsllimknlnvTSLGFRSLK.....EISAGRIYISANRQLCYHHSLNWTKVLRGPTEErLDIKHN
xxx x xxxx EESS xxxxxxxxxxxx EESS xxxxxEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ExxxxxE SS EE SS BTTTEEEEE x EE
EEE xxxBSTTxSS SS xxxx TTTGGGGTT SEEESBEEE HHHxxxxxxxxxxxxHH TTSSS GGGGxxxxxGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTT EESSxxxxx EEES TT S GGGTT EE SS BTTTExEEEEES
514-537
.......CNFL....NGEP.REFAH..EAECFSCHPEC
539-570
PmEGtatCNGS....GSDTcAQCAH..FRDGPHCVSSC
571-598
P.HG.......vlgaKGPI.YKYP.dvQNECRPCHENC
xxxxxxx SSSxxxxSSSSx EEESxxSS EEE TTB
x SxxxSS xxxxBSSSxSGGGBxxSSBSS SSS
x xxxxxxxxxxx x xxx EE E
PDB View PDBsum View Pfam View